WGBSeq {biscuiteer} | R Documentation

## Wrapper for WGBS settings for dmrseq

### Description

Wrapper for WGBS settings for dmrseq

### Usage

    WGBSeq(bsseq, testCovariate, bpSpan = 1000, ...)

### Arguments

`bsseq` | A bsseq object
`testCovariate` | The pData column to test on
`bpSpan` | Span of smoother AND 2x max gap in DMR CpGs (DEFAULT: 1000)
`...` | Other arguments to pass along to dmrseq

### Value

              A GRanges object (same as from dmrseq)

### Examples

      data(BS.chr21, package="dmrseq")
      dat <- BS.chr21

      wgbs <- WGBSeq(dat[1:500, ], "CellType", cutoff = 0.05,
                     BPPARAM=BiocParallel::SerialParam())

[Package biscuiteer version 1.2.0 Index]