biscuiteer-package {biscuiteer} | R Documentation

## Convenience Functions for Biscuit

### Description

A test harness for bsseq loading of Biscuit output, summarization of WGBS data over defined regions and in mappable samples (with or without imputation, dropping mostly-NA rows, age estimates, etc.)

### Author(s)

Timothy J Triche Jr Tim.Triche@vai.org, Wanding Zhou Wanding.Zhou@vai.org, Ben Johnson Ben.Johnson@vai.org, Jacob Morrison Jacob.Morrison@vai.org, Lyong Heo Lyong.Heo@vai.org

### See Also

Useful links:

- https://github.com/trichelab/biscuiteer

- Report bugs at https://github.com/trichelab/biscuiteer/issues

### Examples

      orig_bed <- system.file("extdata", "MCF7_Cunha_chr11p15.bed.gz",
                              package="biscuiteer")
      orig_vcf <- system.file("extdata", "MCF7_Cunha_header_only.vcf.gz",
                              package="biscuiteer")
      bisc <- readBiscuit(BEDfile = orig_bed, VCFfile = orig_vcf,
                          merged = FALSE)

[Package biscuiteer version 1.2.0 Index]