convertSEPair {bigPint} | R Documentation

## Convert SummarizedExperiment to contain defined treatment pair

### Description

Reduce a SummarizedExperiment object that initially contains more than two treatment groups to now only contain a user-specified subset pair of treatment groups. Note that this function is only necesary for users using the SummarizedExperiment input object (instead of the combination of data and dataMetrics input objects.)

### Usage

    convertSEPair(dataSE, group1, group2)

### Arguments

`dataSE` | SUMMARIZEDEXPERIMENT | Summarized experiment format that can be used in lieu of data and dataMetrics
`group1` | CHARACTER STRING | Name of one treatment group that will remain in the dataSE object
`group2` | CHARACTER STRING | Name of second treatment group that will remain in the dataSE object

### Value

A new dataSE object that is a subset of the input dataSE in that it now only contains the user-specified pair of treatment groups.

### Examples

    # Example: Read in example SummarizedExperiment object that contains three
    # treatment groups (S1, S2, and S3). Reduce it to now only contain two
    # treatment groups (S1 and S3).

    data(se_soybean_cn_sub)
    se_soybean_cn_sub_2 <- convertSEPair(se_soybean_cn_sub, "S1", "S3")

[Package bigPint version 1.4.0 Index]