# Generated by roxygen2: do not edit by hand

export("expr<-")
export("indexes<-")
export("pData<-")
export(annotate_assembly)
export(ballgown)
export(ballgownrsem)
export(checkAssembledTx)
export(clusterTranscripts)
export(collapseTranscripts)
export(contains)
export(dirs)
export(eexpr)
export(expr)
export(exprfilter)
export(geneIDs)
export(geneNames)
export(getAttributeField)
export(getGenes)
export(gexpr)
export(gffRead)
export(gffReadGR)
export(iexpr)
export(indexes)
export(last)
export(mergedDate)
export(pData)
export(pctOverlap)
export(plotLatentTranscripts)
export(plotMeans)
export(plotTranscripts)
export(sampleNames)
export(seqnames)
export(stattest)
export(structure)
export(subset)
export(tGene)
export(texpr)
export(transcriptIDs)
export(transcriptNames)
export(writeFiles)
exportClasses(ballgown)
exportMethods("expr<-")
exportMethods("indexes<-")
exportMethods("pData<-")
exportMethods(dirs)
exportMethods(eexpr)
exportMethods(expr)
exportMethods(geneIDs)
exportMethods(geneNames)
exportMethods(gexpr)
exportMethods(iexpr)
exportMethods(indexes)
exportMethods(mergedDate)
exportMethods(pData)
exportMethods(sampleNames)
exportMethods(seqnames)
exportMethods(structure)
exportMethods(subset)
exportMethods(texpr)
exportMethods(transcriptIDs)
exportMethods(transcriptNames)
import(GenomicRanges)
import(IRanges)
import(RColorBrewer)
import(S4Vectors)
import(methods)
import(splines)
importFrom(Biobase,"pData<-")
importFrom(Biobase,pData)
importFrom(Biobase,sampleNames)
importFrom(GenomeInfoDb,seqnames)
importFrom(limma,lmFit)
importFrom(rtracklayer,import)
importFrom(sva,f.pvalue)
