artmsQuantification {artMS} | R Documentation

## Relative quantification using MSstats

### Description

Relative quantification using MSstats including:

- plots

- quantifications (log2fc, pvalues, etc)

- normalized abundance values

### Usage

    artmsQuantification(yaml_config_file, data_object = FALSE, verbose = TRUE)

### Arguments

`yaml_config_file` | (char) The yaml file name and location
`data_object` | (logical) flag to indicate whether the configuration file is a string to a file that should be opened or
`verbose` | (logical) `TRUE` (default) shows function messages

### Value

The relative quantification of the conditions and comparisons specified in the keys/contrast file resulting from running MSstats, in addition to quality control plots (if selected)

### Examples

    artmsQuantification("artms-ab-config.yaml")

[Package artMS version 1.6.5 Index]