conditions {XBSeq} | R Documentation

## Accessor functions for the 'conditions' information in a XBSeqDataSet object.

### Description

Conditions extract the experimental design information similar as used in DESeq.

### Usage

    ## S4 method for signature 'XBSeqDataSet'
    conditions(object,...)
    ## S4 replacement method for signature 'XBSeqDataSet'
    conditions(object,...) <- value

### Arguments

`object` | a XBSeqDataSet
`value` | experimental design information
`...` | Further arguments will be ignored

### Value

The experimental design information for a XBSeqDataSet object

### References

H. I. Chen, Y. Liu, Y. Zou, Z. Lai, D. Sarkar, Y. Huang, et al., "Differential expression analysis of RNA sequencing data by incorporating non-exonic mapped reads," BMC Genomics, vol. 16 Suppl 7, p. S14, Jun 11 2015.

### See Also

`XBSeqDataSet`

### Examples

       data(ExampleData)
       conditions <- factor(c(rep('C1', 3), rep('C2', 3)))
       XB <- XBSeqDataSet(Observed, Background, conditions)
       conditions(XB)

[Package XBSeq version 1.20.0 Index]