pkgdiagram {ViSEAGO} | R Documentation

## Display the ViSEAGO package diagram.

### Description

This function build the ViSEAGO package diagram available displayed in the vignette.

### Usage

    pkgdiagram(x = c("white", "white", "white", "white", "white"))

### Arguments

`x` | rectangles colors for the five subgraphs with all white by defaults

### Details

This function use DiagrammeR package `grViz` to display the ViSEAGO methods diagram with colored or not subgraphs rectangles.

### Value

an html diagram

### References

Knut Sveidqvist, Mike Bostock, Chris Pettitt, Mike Daines, Andrei Kashcha and Richard Iannone (2017). DiagrammeR: Create Graph Diagrams and Flowcharts Using R. R package version 0.9.0. https://CRAN.R-project.org/package=DiagrammeR.

### Examples

    # print diagram without focus
    ViSEAGO::pkgdiagram(x=c("white","white","white","white","white"))

    # print diagram with focus one the gene list
    ViSEAGO::pkgdiagram(x=c("black","white","white","white","white"))

    # print diagram with a focus on the annotation step
    ViSEAGO::pkgdiagram(x=c("white","black","white","white","white"))

    # print diagram with a focus on the enrichment step
    ViSEAGO::pkgdiagram(x=c("white","white","black","white","white"))

    # print diagram with a focus on the Semantic Similarity step
    ViSEAGO::pkgdiagram(x=c("white","white","white","black","white"))

    # print diagram with focus on the visualization step
    ViSEAGO::pkgdiagram(x=c("white","white","white","white","black"))

[Package ViSEAGO version 1.2.0 Index]