Upset {ViSEAGO} | R Documentation

## Enriched GO terms intersections plot.

### Description

This method allows to visualize GO terms intersections between results of enrichment tests.

### Usage

    Upset(object, file = "./upset.xls")

    ## S4 method for signature 'ANY'
    Upset(object, file = "./upset.xls")

### Arguments

`object` | an `enrich_GO_terms-class` or `GO_clusters-class` objects.
`file` | output file name (default to "./upset.xls")

### Details

This function displays the intersections of enriched GO terms (p<0.01) between all results provided by `enrich_GO_terms-class` or `GO_clusters-class` objects. The intersections are shown in an upset plot and printed in a table.

### Value

print table and upset.

### See Also

Other enrich_GO_terms: `enrich_GO_terms-class`, `overLapper()`, `show_heatmap()`, `show_table()`

Other visualization: `GOclusters_heatmap()`, `GOcount()`, `GOterms_heatmap()`, `available_organisms()`, `overLapper()`, `show_heatmap()`, `show_table()`

### Examples

    # load example object
    data(
        myGOs,
        package="ViSEAGO"
    )

    # print upset
    ViSEAGO::Upset(myGOs)

[Package ViSEAGO version 1.2.0 Index]