EntrezGene2GO {ViSEAGO} | R Documentation

## Store available organisms GO annotations at EntrezGene.

### Description

Store the available species and current GO annotations from the gene2go.gz nfile avalable at NCBI EntrezGene ftp.

### Usage

    EntrezGene2GO()

### Details

This function downloads the gene2go.gz file from EntrezGene ftp which contains available organisms (taxid) with the corresponding GO annotations.

### Value

a `genomic_ressource-class` object required by `annotate`.

### References

Matt Dowle and Arun Srinivasan (2017). data.table: Extension of 'data.frame'. R package version 1.10.4. https://CRAN.R-project.org/package=data.table.

Eric Sayers (2013). Entrez Programming Utilities Help.

#' Henrik Bengtsson (2016). R.utils: Various Programming Utilities. R package version 2.5.0. https://CRAN.R-project.org/package=R.utils.

Maglott, D, Ostell, J, Pruitt, KD, Tatusova, T (2011). Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res., 39, Database issue:D52-7.

### See Also

Other genomic_ressource: `Bioconductor2GO()`, `Custom2GO()`, `Ensembl2GO()`, `Uniprot2GO()`, `annotate()`, `available_organisms()`, `genomic_ressource-class`, `taxonomy()`

### Examples

    ## Not run:
    # Download EntrezGene available organisms GO annotations
    EntrezGene<-ViSEAGO::EntrezGene2GO()

    ## End(Not run)

[Package ViSEAGO version 1.2.0 Index]