available_organisms {ViSEAGO} | R Documentation

## Display available organisms from a specified database.

### Description

Display an interactive table with available organisms from a genomic ressource database (Bioconductor, EntrezGene, Ensembl, Uniprot).

### Usage

    available_organisms(object)

    ## S4 method for signature 'genomic_ressource'
    available_organisms(object)

### Arguments

`object` | a `genomic_ressource-class` object created by `Bioconductor2GO`, `EntrezGene2GO`, `Ensembl2GO`,or `Uniprot2GO` methods.

### Details

an interactive `datatable`.

### Value

javascript datatable

### References

Yihui Xie (2016). DT: A Wrapper of the JavaScript Library 'DataTables'. R package version 0.2. https://CRAN.R-project.org/package=DT

### See Also

Other genomic_ressource: `Bioconductor2GO()`, `Custom2GO()`, `Ensembl2GO()`, `EntrezGene2GO()`, `Uniprot2GO()`, `annotate()`, `genomic_ressource-class`, `taxonomy()`

Other visualization: `GOclusters_heatmap()`, `GOcount()`, `GOterms_heatmap()`, `Upset()`, `overLapper()`, `show_heatmap()`, `show_table()`

### Examples

    # display Bioconductor table
    Bioconductor<-ViSEAGO::Bioconductor2GO()
    ViSEAGO::available_organisms(Bioconductor)
    ## Not run:

    # display EntrezGene table
    EntrezGene<-ViSEAGO::EntrezGene2GO()
    ViSEAGO::available_organisms(EntrezGene)

    # display Ensembl table
    Ensembl<-ViSEAGO::Ensembl2GO()
    ViSEAGO::available_organisms(Ensembl)

    # display Uniprot table
    Uniprot<-ViSEAGO::Uniprot2GO()
    ViSEAGO::available_organisms(Uniprot)

    ## End(Not run)

[Package ViSEAGO version 1.2.0 Index]