4d4f641de5d96b994026976882745759 *DESCRIPTION
8bd6afcf8e152dc9999d9066707cc81a *INDEX
9d0c63175a099288ed8969fe1677fa33 *Meta/Rd.rds
6a3ceea647074fde2749b8a0158fb602 *Meta/data.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
f1a5aba7468eeee61c228622cabcf945 *Meta/hsearch.rds
8431bf53f7e4e45c7940e08c9f1b8e23 *Meta/links.rds
cf47c26c217e2d0f277e17c8cd035798 *Meta/nsInfo.rds
f4cb8ec8c68e4e36c998f9a30a000097 *Meta/package.rds
38ae9c5f7a1a41e7230953f0abc5583b *Meta/vignette.rds
f2a560657232b2afbdce094b763648da *NAMESPACE
302eb74005d4628313dd72f235ada0c6 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/VariantTools
ae682d2f58c0db477fdb7d7e8164e971 *R/VariantTools.rdb
3ab090a2fe283d919ea82758aad3e083 *R/VariantTools.rdx
147b05616262b8b0605ad82917fe8c23 *data/vignette.rda
8d5ddf1aee747bfe9f75ad0ffc3f13e3 *doc/VariantTools.R
b7f9d4a21e2fe40fe4373ba070ec12c4 *doc/VariantTools.Rnw
a25fa0f5645b4c9ca4bb58173f3af8cb *doc/VariantTools.pdf
e502007f6e906fa8467344cec2f4e1b6 *doc/fig/VariantCallingProcess.pdf
e6a9a9d24613ddbf590543bc5ebeac0d *doc/fig/bar-caller-freq-summary-dbSNP-count-all.pdf
0ea34819326314eae4c6b9d5f4ee9dbe *doc/fig/bar-fdr-cov-bin-merged-all.pdf
1c91bbadcef2b6cba06c5d9b328ba192 *doc/fig/bar-fnr-cov-bin-merged-all.pdf
380b2a619aefe23bd017320b0f05540f *doc/fig/boxplot-altFraction.pdf
34a468a845bb92d33e20533d70da349b *doc/fig/boxplot-expected-obs-freq-source-merged-vt.pdf
dc08e35af067169253e263d844fbc13f *doc/fig/boxplot-obs-freq-sample-ceu-all.pdf
a6d1a91d902b823ea49e3533087adc3a *doc/fig/density-altFraction.pdf
9081576fb3392c333fa126ad4557c53a *doc/fig/dot-percent-recovered-caller-merged-20-all.pdf
31b854f38096fba1546ecf0124be1101 *doc/fig/errors.pdf
ff7f4e378ea15116c447180c721ed35c *doc/fig/hist-fdr-rep-count-all.pdf
cafe8bda6b95fb9dd48a1f3dcd14fca3 *doc/fig/igv_high_cov_neg.png
72c5d2679455c4913dfc6c684c2839e2 *doc/fig/mix.pdf
5192ba8e79d29bf7c9f7f2008dd7aa98 *doc/fig/post-filters.pdf
c81e6de4687156b4883bdefed5c79edb *doc/fig/variant-calling-filters.pdf
8360dff4ce73e85ebe879d662a8da062 *doc/fig/workflow.pdf
a6d9c0aa068f83ee474249201946c09f *doc/index.html
04f3442396ed48d6be465606e784d7ca *doc/tutorial.org
e18d1dc09c30c968212c5bef7d5dd6da *doc/tutorial.pdf
e372e3b655282fec0a7ca5f149509595 *help/AnIndex
dc049c721e39b52ab064aa1634b7c57c *help/VariantTools.rdb
90daae43caba8f81350c510ef3b6133a *help/VariantTools.rdx
890858b3e657215a8e71680cd6485e3b *help/aliases.rds
815d7737656431d1781e01a5c0a4fccb *help/paths.rds
24b09f2f685fbdae988796dccb09f912 *html/00Index.html
99ae6f9897ddff9f246731ace12a21f6 *html/FilterConstructors.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
d4a670385a652ca50d354ec2c6b0cf99 *html/annnotateWithControlDepth.html
6f70c93da5967c7a70f37e48c9a3a5b1 *html/callGenotypes.html
70f5ea0a28b4201b81f60b63fbb66117 *html/callSampleSpecificVariants.html
8292264eaf946e5779cbdc8c5a4dc554 *html/callVariants.html
7f7bc501e380ea389d314fbd53e56ff9 *html/callWildtype.html
413dcad25773b2be58f7067342e31017 *html/concordance.html
8fe050c116a212b9b075137a494ff1ad *html/extractCoverageForPositions.html
50e56d0303e11175b69ac05a8b167f6f *html/matchVariants.html
70ec912d01336f1f34016d60123a9f17 *html/pileupVariants.html
270ce94aec5d584094bbf8107a201d96 *html/postFilterVariants.html
ba6248a5b319306843cd11aa8d25e631 *html/qaVariants.html
0564c1103cf21de718b861e9f7aa5e82 *html/tallyVariants.html
7515d0c919b5152626d17ad148bb460d *html/variantGR2Vcf.html
10793b6f56736fb6bf52032922553864 *html/vignette.html
2c4749f07b3615e481b4df89ca88d34d *unitTests/test_calculateConcordanceMatrix.R
2ff6eb94487808d81e15a164c69023f1 *unitTests/test_idVerify.R
cfc6d0f068fbd1c0cf8017e5aae89743 *unitTests/test_variantConcordance.R
a43c2278392bc452656836bbd0ceafae *vcf/header.csv
