show_contained_variants_for_ccl {Uniquorn} | R Documentation

## Variants In Cancer Cell Line

### Description

This function shows all mutations present in the database for a selected cancer cell line and reference genome.

### Usage

    show_contained_variants_for_ccl(
        name_ccl,
        ref_gen,
        library_name,
        mutational_weight_inclusion_threshold
    )

### Arguments

`name_ccl` | a character vector giving the identifier of the cancer cell line for which mutations will be shown.
`ref_gen` | a character vector specifying the reference genome version. All training sets are associated with a reference genome version. Default is `"GRCH37"`.
`library_name` | Name of the reference library
`mutational_weight_inclusion_threshold` | Include only mutations with a weight of at least x. Range: 0.0 to 1.0. 1= unique to CL. ~0 = found in many CCL samples.

### Value

GenomicRanges object that contains the ccl's variants

### Examples

    ## Show all mutations for Cancer Cell Line 'SK_OV_3'
    show_contained_variants_for_ccl(
        name_ccl = "SK_OV_3",
        ref_gen = "GRCH37",
        library_name = "CELLMINER",
        mutational_weight_inclusion_threshold = 0
    )

[Package Uniquorn version 2.8.0 Index]