hypothesis.add.homologous {TRONCO} | R Documentation

## hypothesis.add.homologous

### Description

Add all the hypotheses related to homologou events

### Usage

    hypothesis.add.homologous(
      x,
      pattern.cause = "*",
      pattern.effect = "*",
      genes = as.genes(x),
      silent = FALSE
    )

### Arguments

`x` | A TRONCO compliant dataset.
`pattern.cause` | Possibile causes for the pattern.
`pattern.effect` | Possibile effects for the pattern.
`genes` | List of genes to be considered as possible homologous. For these genes, all the types of mutations will be considered functionally equivalent.
`silent` | A parameter to disable/enable verbose messages.

### Value

A TRONCO compliant object with the added hypotheses

[Package TRONCO version 2.20.1 Index]