export.mutex {TRONCO} | R Documentation

## export,mutex

### Description

Create an input file for MUTEX (ref: https://code.google.com/p/mutex/ )

### Usage

    export.mutex(
      x,
      filename = "tronco_to_mutex",
      filepath = "./",
      label.mutation = "SNV",
      label.amplification = list("High-level Gain"),
      label.deletion = list("Homozygous Loss")
    )

### Arguments

`x` | A TRONCO compliant dataset.
`filename` | The name of the file
`filepath` | The path where to save the file
`label.mutation` | The event type to use as mutation
`label.amplification` | The event type to use as amplification (can be a list)
`label.deletion` | The event type to use as amplification (can be a list)

### Value

A MUTEX example matrix

### Examples

    data(crc_gistic)
    dataset = import.GISTIC(crc_gistic)
    export.mutex(dataset)

[Package TRONCO version 2.20.1 Index]