as.events {TRONCO} | R Documentation

## as.events

### Description

Return all events involving certain genes and of a certain type in 'x', which should be a TRONCO compliant dataset - see `is.compliant`.

### Usage

    as.events(x, genes = NA, types = NA, keysToNames = FALSE)

### Arguments

`x` | A TRONCO compliant dataset.
`genes` | The genes to consider, if NA all available genes are used.
`types` | The types of events to consider, if NA all available types are used.
`keysToNames` | If TRUE return a list of mnemonic name composed by type + gene

### Value

A matrix with 2 columns (event type, gene name) for the events found.

### Examples

    data(test_dataset)
    as.events(test_dataset)
    as.events(test_dataset, types='ins_del')
    as.events(test_dataset, genes = 'TET2')
    as.events(test_dataset, types='Missing')

[Package TRONCO version 2.20.1 Index]