tpp2dExperiment-class {TPP2D} | R Documentation

## S4 TPP2D Experiment Class

### Description

S4 TPP2D Experiment Class

### Value

an object of class tpp2dExperiment

### Slots

`configTable`

  data.frame.

`idVar`

  character.

`intensityStr`

  character.

`fcStr`

  character.

`nonZeroCols`

  character.

`geneNameVar`

  character.

`qualColName`

  character.

`naStrs`

  character.

`concFactor`

  numeric.

`medianNormalizeFC`

  logical.

`filterContaminants`

  logical.

`minObs`

  numeric.

`independentFiltering`

  logical.

`fcThres`

  numeric.

`optim_fun_h0`

  function.

`optim_fun_h1`

  function.

`slopEC50`

  logical.

`maxit`

  numeric.

`BPPARAM`

  character.

`B`

  numeric

`byMsExp`

  logical.

`alpha`

  numeric.

`tidyDataTable`

  data.frame.

`modelParamsDf`

  data.frame

`resultTable`

  data.frame

`bootstrapNullDf`

  data.frame

`hitTable`

  data.frame

### Examples

    tpp2dObj <- new("tpp2dExperiment")

[Package TPP2D version 1.4.1 Index]