computexCellScore {TNBC.CMS} | R Documentation

## Computation of microenvironment score

### Description

Computes a microenvironment score. This function wraps around the `xCellAnalysis` function of the `xCell` package to compute a microenvironment score.

### Usage

    computexCellScore(mat, rnaseq)

### Arguments

`mat` | A matrix of gene expression with genes in rows and samples in columns (rownames corresopnding to gene symbol).
`rnaseq` | logical to determine if input data is RNA-Seq gene expression profile

### Value

A data frame containing stromal and immune scores

[Package TNBC.CMS version 1.4.0 Index]