f2630f04b771703387dda2a00741c1a6 *DESCRIPTION
27b80f7f7185212dc706b536da0f13b5 *INDEX
e55c74d8f70184f9da50f9a3d3c5f523 *Meta/Rd.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
a8d74b3b8970f217ad65a606c3b73bae *Meta/hsearch.rds
f114156e01e13a15456b881d6d2eb1b4 *Meta/links.rds
8deaf6d7301f3fe3c3271d6caf2d91e3 *Meta/nsInfo.rds
15d605e999e5c120c1afd8eb8b817394 *Meta/package.rds
a62a6a2033d86073e3c5cc259dd7bd37 *Meta/vignette.rds
6feba8077718b0c668857b5d7b860d6d *NAMESPACE
ebf0fc819595d631b8bf280c4b049940 *R/SplicingGraphs
ac4eafc08b4a42127705b272d94dd30b *R/SplicingGraphs.rdb
bfa3955ffc9a40bec0e11de87987cab4 *R/SplicingGraphs.rdx
8bf11584940c3bd7af494eb933047d44 *doc/SplicingGraphs.R
8e772f322a2f2ae586804ae50e60e6bf *doc/SplicingGraphs.Rnw
9fd71434baffc43bb70403c720c2b635 *doc/SplicingGraphs.pdf
88377b5fd65dbaaf32cf912ac99e20ac *doc/index.html
e927d6e86c26ef2f567f538e4d02c6bb *extdata/ASpatterns.txt
b10a130d5d8e8aa34a67c0676e678e42 *extdata/TSPCsg.rda
2496dff4893d460511d871a0c485aa6b *extdata/toy_genes.gff3
648ca39416010bda3340da48c26912ef *extdata/toy_overlaps.txt
62072a44e72d0ea965e19a12820417ca *extdata/toy_reads.sam
ff355f3e1adcaa01590064536ff5380f *help/AnIndex
933b73febd04f9eec0635700421f638c *help/SplicingGraphs.rdb
1c23c2effcb6ee5e626677bc1ddd2921 *help/SplicingGraphs.rdx
7d556ac507f85e915990cdfdb5f34037 *help/aliases.rds
5c2345e80ecc971e3264155a1677495c *help/paths.rds
10b99f27c392b6a3971bf08fb0ee9039 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
85a95a35197ba4c7c7f48b5a2fe7df34 *html/SplicingGraphs-class.html
3880678750c72bf7b99125164979abcc *html/SplicingGraphs-package.html
e6865b3bdf8131370c4f19ef077fef48 *html/TSPCsg.html
81299537108132fefe471f1a9713daa3 *html/assignReads.html
6d08b956f1d5142da6889515a560b218 *html/bubbles-methods.html
65854a941a3fc2c6f7b2d5bbb4c4c835 *html/countReads-methods.html
3e609c244e3515652cba5e5d7aabe1ee *html/plotTranscripts-methods.html
6f7de31da76722b86befaef689d254b4 *html/rsgedgesByGene-methods.html
64441ed763779ed1feffc84cf968c846 *html/sgedges-methods.html
02b0ced1172467fd7f3155e14d2ca35d *html/sgedgesByGene-methods.html
418dce0f54646678ba2b36408a90eb07 *html/sgraph-methods.html
6e29296de31d8f527e71d2fdc7391d0c *html/toy_data.html
21c055283f41319701503325d40b12e5 *html/txpath-methods.html
f22485f979fcbadb1e6d5c1498f2de11 *scripts/TSPC-utils.R
0ee9097358b000f70562de18bc67a066 *scripts/create-vignette-plots.R
44830c9a0141fe8277304d7419d7a20d *scripts/makeTSPCsg.R
1bba688669d20686db16f84dc56a8e2f *unitTests/test_countReads-methods.R
