aeab950bee58fcca0c51dab3766b6a3e *CITATION
6391874c1367801b067c5c62802fe292 *DESCRIPTION
eb4e7591368c76f0496fbdb16d0d016b *INDEX
ccb870e2d825ea05aedc3f1297deab22 *Meta/Rd.rds
93d9433e324e72b54bfcdf768f89078f *Meta/data.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
1181db2b8e74a9810a1001554e1b82d1 *Meta/hsearch.rds
346e7d7369a4700b0fbb03b842a1cea7 *Meta/links.rds
a10b4b3dc796709ff712f2c0407c1e78 *Meta/nsInfo.rds
85f78eeba8ea59e0926b41f812c0a858 *Meta/package.rds
c03389d26cdc79f96e898c0d41bc7e0d *Meta/vignette.rds
4c068cc3d0d28139f5ef50700dd174bb *NAMESPACE
eee0094f742a2e898fa42f2687ae08d5 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/SeqGSEA
59f96011d0d68820af6b71b63920c448 *R/SeqGSEA.rdb
fc517ed704847e7e0cd66819846d3915 *R/SeqGSEA.rdx
0de951c8acb635491137dd18ea274d3c *data/DEscore.RData
f428a2fb01a1897186df10ac9200cb88 *data/DEscore.perm.RData
01eb20f550590c90a09c3c66be19cfe3 *data/DSscore.RData
0dde568ce46206f2cdfd093e657ec717 *data/DSscore.perm.RData
1329bfa58cd12a17be862b75e63f0d28 *data/GS_example.RData
32415601bef23b9cd7a3f287920787e2 *data/RCS_example.RData
503f9f527192840a4197a568c15c9523 *doc/SeqGSEA.R
e1ae461c8dd63eb42cd0011451272c01 *doc/SeqGSEA.Rnw
6ab25f267dafa5cef76a79497879b68d *doc/SeqGSEA.pdf
afa83dbacb8ca9adc13efb1d47d56ee4 *doc/index.html
aa55e94bc8a566642e2185b96a3af157 *extdata/SC02.exonCnt.txt
0db4255cfc2712875daef3b4cad2fb30 *extdata/SC03.exonCnt.txt
a5b3f6a1fd87583872c6e125787769a0 *extdata/SC06.exonCnt.txt
46c91a7af23910fcec920eba62d31181 *extdata/SC08.exonCnt.txt
7e5ce78db9689017625c617ef766d9a7 *extdata/SC09.exonCnt.txt
50040700402df45704b7818bdaa5939c *extdata/SC11.exonCnt.txt
8e9b647d49feb3eeebf4f08cacfaa264 *extdata/SC13.exonCnt.txt
744f526772bc3c5e2339960a069fc5b9 *extdata/SC15.exonCnt.txt
9cbbedac1f57b91f4d54fcd0dcbea92e *extdata/SC19.exonCnt.txt
cf06c735cdfcd748ae4952306916f00b *extdata/SC23.exonCnt.txt
82ea07828e987a34016fd6df0a0ae8b7 *extdata/SN02.exonCnt.txt
69dbf83514ff2e35b2e049fb682598b9 *extdata/SN03.exonCnt.txt
d7d5badfedd65d3be5afc63b7b8ad767 *extdata/SN06.exonCnt.txt
4d1b6d41d721cb6e4c7568da2f374976 *extdata/SN08.exonCnt.txt
92d7d1a7b75d1553e25fd7c6716185da *extdata/SN09.exonCnt.txt
56e14a678cad226729b15bfe71ebcdb8 *extdata/SN11.exonCnt.txt
b55cbbb76d20758c07cb8acadab0bac6 *extdata/SN13.exonCnt.txt
ba8e84b422451b2cb406e271f6ecf700 *extdata/SN15.exonCnt.txt
e4de0cb79dae4a7617e82b961cba6c14 *extdata/SN19.exonCnt.txt
45b051c29bb812d73224c2e5db2e33d6 *extdata/SN23.exonCnt.txt
99a21bc95ce21d5613695746794ff2c3 *extdata/geneCounts.txt
e10c7313a4977ab1016ee89dca648b14 *extdata/gs_symb.txt
c4beb55cebd8c597c3193a087ae50783 *extscripts/count_in_exons.py
2849d48898b0f98630609b8806b285fc *extscripts/prepare_exon_annotation_ensembl.py
3fd83cc194195f2ccbff8d751d4c7463 *extscripts/prepare_exon_annotation_refseq.py
3bcbbcf1c2ac6c414599721cd3b11fa7 *help/AnIndex
635775e1749d63dbf2b0a1604693ae84 *help/SeqGSEA.rdb
e7aad14a404097152f7028402d2b1b43 *help/SeqGSEA.rdx
3c9838e14d45bc840aa20ebc036e9a04 *help/aliases.rds
c4f12e5ca432d70980f78e6166f6f734 *help/paths.rds
e8f5943492962551f5065a28883de295 *html/00Index.html
489d15b9af6ed32277d93c7ba1e82eb2 *html/DENBStat4GSEA.html
e5e66eacf8e38e9178db450ff6b2b180 *html/DENBStatPermut4GSEA.html
4399588fdf5bb7b43da7a3486f226530 *html/DENBTest.html
937bb2f484b0c468318ee3b51c6ddccd *html/DEpermutePval.html
7db9cb948312fd2d87d9dc50f08d2e1d *html/DEscore.html
112692e0b428db2a440f0286dd74b1db *html/DSpermute4GSEA.html
56d433bd5486cd83a5d8c2fd674908bb *html/DSpermutePval.html
f0277b66eed4743aa377d5b0a105f246 *html/DSresultExonTable.html
4ec05d8809fc20b69fe1c131c39775f1 *html/DSresultGeneTable.html
69312a996c3b8258c28279d5872ed2f8 *html/GSEAresultTable.html
2b204fa822f7bd4db2ef2a04528ba44c *html/GSEnrichAnalyze.html
c69d15b5d6c291bd2d8cbb8b50c1af8a *html/GS_example.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
91666bdbf3c881b7001aaa564bf314f1 *html/RCS_example.html
7a7e82207c9c68058f08aed2601ccce2 *html/ReadCountSet-class.html
cd3d7a99d40ab4852529494533e3a718 *html/SeqGSEA-package.html
49f63849b0e598758117c67ac85998df *html/SeqGeneSet-class.html
342d9608beeadb106d83f637edee3fe8 *html/calES.html
d12d43c3ff5ac7f0e347d952ed3e8c31 *html/calES.perm.html
ef4fbfcec533836f2b05e23139d505cd *html/convertEnsembl2Symbol.html
deb74c67a8062faf3520528f45842896 *html/convertSymbol2Ensembl.html
78bfd2cd7b2c000087975d35ddc40845 *html/counts-methods.html
75b89a714254c461d8011f2d30dc6183 *html/estiExonNBstat.html
ac8b6023606ca09ad1379ced9478a402 *html/estiGeneNBstat.html
5f5b090f96ba3b0128dfc67c91ff7b24 *html/exonID.html
4b4a6c483a6e5d8a7021b3390215184a *html/exonTestability.html
2921ed32039fa2424fe49b50f68c69c0 *html/geneID.html
783c67ee264670ddc69e1de5119915ce *html/geneList.html
20fb706dab8f9c722a086e659ae1c9a4 *html/genePermuteScore.html
e757def0b308e20614aa174ddc618bd9 *html/geneScore.html
08023abeb5051614368f8a7997b4e43b *html/geneSetDescs.html
f66c06f8efe8eb6b7bf513d585a3af8e *html/geneSetNames.html
ddd8368c1e2868d47e8296a0ef5f5210 *html/geneSetSize.html
487d4438bc2a0eb0a1cf4b2365b292ec *html/geneTestability.html
166cf17688b4c966b9715b6e0618c3db *html/genpermuteMat.html
af87e6836bd250f35bd412dc91e85391 *html/getGeneCount.html
b373382733fdb915ec25185c65d55083 *html/label.html
d10fee4a8da2b86803ba085f9d1ffaf2 *html/loadExonCountData.html
5266c36e36d6f41e8540e7fc297331a2 *html/loadGenesets.html
5ce67ce851e77b14b4f0d9e789532528 *html/newGeneSets.html
cf4d288c59cb47dfd34eb3683e43e9f7 *html/newReadCountSet.html
84e328e270f9787c884de60c48a8b3ff *html/normES.html
fdf4cdada4b366b0e1847ae8beef93b4 *html/normFactor.html
55d2efc1c2ad6e13e087176c148c5f28 *html/plotES.html
6ede17c9919750e26c4a2ef7899b34a5 *html/plotGeneScore.html
d29edf5129d3b4e2214d9968dc51eb1c *html/plotSig.html
3f838eac1617ab55c21f21239d327c3a *html/plotSigGeneSet.html
8c17f0cfa3b8d0a2944f72c0937a59ca *html/rankCombine.html
6abc25adcb1b7131bbcbf63f6bcf8423 *html/runDESeq.html
c3e37c6c3a107aaca135f81aeeb30888 *html/runSeqGSEA.html
4eff22e9839d73421c17f3146540cd3f *html/scoreNormalization.html
fbd1f809eeec5b5e8fd31a8a55afbeb4 *html/signifES.html
b5246a742dd074d4d5099b2a549eaf44 *html/size.html
6a9f004a4058197851b40935590bd2be *html/subsetByGenes.html
015271fcd23cc20d4a6a2641bb190607 *html/topDEGenes.html
bd0ed3af98795863bb7d18cb5b92f223 *html/topDSExons.html
da40aaef2d72408cfb301be026e6801a *html/topDSGenes.html
bded0e494b335d343e6d82d6d4b6c364 *html/topGeneSets.html
63e0c81d593eca0e12997eed333f1a5a *html/writeScores.html
568910a21ceb47d440013c2bb96ae73e *html/writeSigGeneSet.html
