hyperG {SLGI} | R Documentation

## Hypergeometric test

### Description

a hypergeometric test for genetic interaction data.

### Usage

    hyperG(data, nbTested, universe)

### Arguments

`data` | Matrix with 2 columns the first one corresponds to the number of interactions per pair of interacting complexes and the second one to number of tested interactions. This could be the first two columns resulting from a call to the `test2Interact` function.
`nbTested` | Number of interacting pairs
`universe` | Total Number of tested pairs

### Author(s)

N. LeMeur

### See Also

`phyper`

### Examples

    ## Create matrix interaction x tested matrix
    interact <-  c(1, 3, 2, 2, 6, 5, 2, 4, 1, 3)
    tested <-  c(3, 3, 5, 4, 8, 5, 3, 4, 2, 3)
    mat <- cbind(interact, tested)

    ## Perform test
    res <- hyperG(mat, 1000, 10000)
    summary(res$P)

[Package SLGI version 1.48.0 Index]