CIMLR_Estimate_Number_of_Clusters {SIMLR} | R Documentation

## please refer to https://github.com/danro9685/CIMLR

### Description

estimate the number of clusters by means of two huristics as discussed in the CIMLR paper

### Usage

    CIMLR_Estimate_Number_of_Clusters(all_data, NUMC = 2:5, cores.ratio = 1)

### Arguments

`all_data` | is a list of multi-omic data each of which is an (m x n) data matrix of measurements of cancer patients
`NUMC` | vector of number of clusters to be considered
`cores.ratio` | ratio of the number of cores to be used when computing the multi-kernel

### Value

a list of 2 elements: K1 and K2 with an estimation of the best clusters (the lower values the better) as discussed in the original paper of SIMLR

### Examples

    clusters = 2:5
    ## Not run:
    CIMLR_Estimate_Number_of_Clusters(GliomasReduced$in_X,
       NUMC = clusters,
       cores.ratio = 0)

    ## End(Not run)

[Package SIMLR version 1.14.0 Index]