574d115e1f8dd816bbc39b8c4a0eccbf *DESCRIPTION
5914d7f5dcce9b36f452e980ae11f324 *INDEX
324fddd72108c2431f52aab53e29427c *Meta/Rd.rds
d675fd20c97a2aeb7ed7b102f326a366 *Meta/data.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
27711f71781bd0e522cdf30b08fb5d51 *Meta/hsearch.rds
c8208a7a907d927a9f176581b320f1e4 *Meta/links.rds
93dbbc6b19b77584b46886bbb81e009c *Meta/nsInfo.rds
29ab1f74928fdfbe21b5f0bccc3d6596 *Meta/package.rds
e711e0d3a04a28169019f77021abdfff *Meta/vignette.rds
540677ce775da22abb0f5b4b7468bf5b *NAMESPACE
95d8c304a020aef8380b4ee08521e48c *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/SCOPE
92e8205606d249e28c42655e8606ce69 *R/SCOPE.rdb
4c6157dddd5a724caa04a357f11d0359 *R/SCOPE.rdx
534588930df47ce70271f6319464bdd0 *data/Rdata.rdb
47622626f10e6c6664643a9605943618 *data/Rdata.rds
1c336dd7d3c235a536dadeeba0296084 *data/Rdata.rdx
896ee5cf11492ae4b0d65f855072ce63 *doc/SCOPE_vignette.R
2b99cb210da6f381e4adf2321300a186 *doc/SCOPE_vignette.Rmd
e38c54b68e5ce55028d90c0ab9fa92b0 *doc/SCOPE_vignette.html
880f6311627079f047ed9824ef50baa8 *doc/index.html
1e9c0988e992371032f30ee5ca2dbce3 *docs/split_script.py
c12183e4c7b3cfa9f504cb21e463adae *help/AnIndex
4e06c1ef3abe92a9205d3be688ee719c *help/SCOPE.rdb
d0569fa8588929ead6af4ebdd394adc6 *help/SCOPE.rdx
eafcd55e9175459accca74e8e489190f *help/aliases.rds
3119b11688974889fc1b9534923b991d *help/paths.rds
8110258a0a34b32f2cf4cc033969d2ef *html/00Index.html
19d0a0263515c410b13e3376fb389c35 *html/QCmetric.scopeDemo.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
0f3da6ae8ebb245c6e26aec06c6fb44a *html/Y_sim.html
c1abb282b1bcda3e6c0f805d87e65ce8 *html/coverageObj.scopeDemo.html
4c9662d30fd45dbb619dc0f25814923b *html/get_bam_bed.html
c5f42a620458e41a2cada8622389f077 *html/get_coverage_scDNA.html
51d201bcc7714668250abe8edae2447a *html/get_gc.html
767249ca0c0a2c4423e77091e79a1ae5 *html/get_gini.html
f2438e50486ca6b856107331c2ccce6b *html/get_mapp.html
02d05b5daa181b127b0b2ec3017d8bf3 *html/get_samp_QC.html
6a0fdf8e6f5403649ef2e48400b089e2 *html/iCN_sim.html
27096494f35dc8af468abee29dca2b29 *html/initialize_ploidy.html
ae829a99a38e152d4a34071bd9720b62 *html/initialize_ploidy_group.html
5ee7108c9e47a95b735de0928abecdbb *html/normObj.scopeDemo.html
469d4b0ba11ccf52521005f030d4a169 *html/normalize_codex2_ns_noK.html
648536c494ce63199a4bacf76a3608a9 *html/normalize_scope.html
74067180d42d074d2ea0da5bfceaf5a8 *html/normalize_scope_foreach.html
4b5c8f0cefb32b96738539409a73ed96 *html/normalize_scope_group.html
dda5618f4fdc9ae05a58e57e4cda838f *html/perform_qc.html
67302ad60716a6b5bf2257d1a31f6871 *html/plot_EM_fit.html
35383cdfbfa9b181c4018bdd4fec0bd9 *html/plot_iCN.html
3e6951432bc98093293e430ed157be18 *html/ref.scopeDemo.html
bc723ff99b993cf97d3262f3a7df4ca3 *html/ref_sim.html
2fb2cb557222c22c1b9818f7a1df9ceb *html/segment_CBScs.html
