sc3_plot_markers {SC3} | R Documentation

## Plot expression of marker genes identified by `SC3` as a heatmap.

### Description

By default the genes with the area under the ROC curve (AUROC) > 0.85 and with the p-value < 0.01 are selected and the top 10 marker genes of each cluster are visualized in this heatmap.

### Usage

    sc3_plot_markers.SingleCellExperiment(object, k, auroc, p.val, show_pdata)

    ## S4 method for signature 'SingleCellExperiment'
    sc3_plot_markers(object, k, auroc = 0.85,
      p.val = 0.01, show_pdata = NULL)

### Arguments

`object` | an object of 'SingleCellExperiment' class
`k` | number of clusters
`auroc` | area under the ROC curve
`p.val` | significance threshold used for the DE genes
`show_pdata` | a vector of colnames of the pData(object) table. Default is NULL. If not NULL will add pData annotations to the columns of the output matrix

[Package SC3 version 1.16.0 Index]