sc3_plot_expression {SC3} | R Documentation

## Plot expression matrix used for SC3 clustering as a heatmap

### Description

The expression panel represents the original input expression matrix (cells in columns and genes in rows) after the gene filter. Genes are clustered by kmeans with k = 100 (dendrogram on the left) and the heatmap represents the expression levels of the gene cluster centers after log2-scaling.

### Usage

    sc3_plot_expression.SingleCellExperiment(object, k, show_pdata)

    ## S4 method for signature 'SingleCellExperiment'
    sc3_plot_expression(object, k,
      show_pdata = NULL)

### Arguments

`object` | an object of 'SingleCellExperiment' class
`k` | number of clusters
`show_pdata` | a vector of colnames of the pData(object) table. Default is NULL. If not NULL will add pData annotations to the columns of the output matrix

[Package SC3 version 1.16.0 Index]