# R Wrapper for HISAT2 Aligner

## Documentation for package ‘Rhisat2’ version 1.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

Rhisat2-package | R hisat2 wrapper
extract_splice_sites | Extract splice sites from annotation
hisat2 | Align reads with HISAT2
hisat2_build | Generate HISAT2 index
hisat2_build_usage | Print usage of hisat2-build
hisat2_usage | Print usage of hisat2
hisat2_version | Print HISAT2 version