extractDrugPubChemComplete {Rcpi} | R Documentation

## Calculate the PubChem Molecular Fingerprints (in Complete Format)

### Description

Calculate the PubChem Molecular Fingerprints (in Complete Format)

### Usage

    extractDrugPubChemComplete(molecules, silent = TRUE)

### Arguments

`molecules` | Parsed molucule object.
`silent` | Logical. Whether the calculating process should be shown or not, default is `TRUE`.

### Details

Calculate the 881 bit fingerprints defined by PubChem.

### Value

An integer vector or a matrix. Each row represents one molecule, the columns represent the fingerprints.

### Author(s)

Nan Xiao <https://nanx.me>

### See Also

extractDrugPubChem

### Examples

    smi = system.file('vignettedata/FDAMDD.smi', package = 'Rcpi')

    mol = readMolFromSmi(smi, type = 'mol')
    fp  = extractDrugPubChemComplete(mol)
    dim(fp)

[Package Rcpi version 1.24.0 Index]