initiateAnalysis {ROSeq} | R Documentation

## Computes differential analysis for a given gene

### Description

Takes in the row index which corresponds to a gene and evaluates for differential expression across two cell types.

### Usage

    initiateAnalysis(gene, scdata, scgroups, classOne, classTwo)

### Arguments

`gene` | The row index of the normalised and filtered, read count matrix
`scdata` | The normalised and filtered, read count matrix
`scgroups` | The location of the two sub-populations
`classOne` | The location of the first sub-population, for example, sample names as given as columns names
`classTwo` | The location of thesecond sub-population, for example, sample names as given as columns names

### Value

combinedResults A vector containing 12 values (gr1: a, g1: b, gr1: A, gr1: number of bins, gr1: R2, gr2: a, gr2: b, gr2: A, gr2: number of bins, gr2: R2, T, p)

[Package ROSeq version 1.0.0 Index]