gcPerPosition {R453Plus1Toolbox} | R Documentation

## GC-Content Per Position

### Description

This function plots the GC-content frequency per base position.

### Usage

      gcPerPosition(object, range=0.95, type="l", col="blue", xlab="Position", ylab="Frequency", ...)

### Arguments

`object` | An object of class DNAStringSet, ShortRead or SFFContainer.
`range` | An integer vector of length one or two. If length one only bases up to the percent quantile of read lengths defined by the given value are shown. A vector of length two gives the start and end base between which the GC-content is plotted.
`type` | The type of the plot (see ‘plot’).
`col` | The plotting color.
`xlab` | The X axis label.
`ylab` | The Y axis label.
`...` | Arguments to be passed to methods, such as graphical parameters (see ‘par’).

### Author(s)

Christian Ruckert

[Package R453Plus1Toolbox version 1.38.0 Index]