nucleotideCharts {R453Plus1Toolbox} | R Documentation

## Nucleotide Charts

### Description

This function plots the relative frequency of the four bases for each position in the sequences.

### Usage

      nucleotideCharts(object, range=0.95, linetypes=c(A="l", C="l", G="l", T="l", N="l"),
        linecols=c(A="black", C="red", G="blue", T="green", N="grey70"), xlab="Position",
        ylab="Frequency", ...)

### Arguments

`object` | An object of class DNAStringSet, ShortRead or SFFContainer.
`range` | An integer vector of length one or two. If length one only bases up to the percent quantile of read lengths defined by the given value are shown. A vector of length two gives the start and end base between which the nucleotide frequencies are plotted.
`linetypes` | The line types used for the four nucleotids + N, see (see ‘par’)
`linecols` | The colors in which the four nucleotids + N should be plotted.
`xlab` | The X axis label.
`ylab` | The Y axis label.
`...` | Arguments to be passed to methods, such as graphical parameters (see ‘par’).

### Author(s)

Christian Ruckert

[Package R453Plus1Toolbox version 1.38.0 Index]