R3CPET-package {R3CPET} | R Documentation

## 3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process

### Description

The main goal of 3CPET is to try to infer the set of protein networks that are likely to work together inorder to maintain chromatin loops obtained by a ChIA-PET experiment. It is based on an idea silimar to the one used for document classification. It starts first by building a PPI network for each chromatin interaction, then uses an HDLA (Hierarchical Dirichlet Latent Allocation) model to infer the set of networks that are enriched together.

### Details

Package: | R3CPET
Type: | Package
Version: | 1.0
Date: | 2013-11-23
License: | GPL (>= 3.0)

### Author(s)

Written by M.N.Djekidel Maintainer: Mohamed Nadhir Djekidel <nde12@mails.tsinghua.edu.cn>

### References

M.N Djekidel et al,3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process, in press, 2015

### See Also

`ChiapetExperimentData`, `ChromMaintainers` , `HLDAResult`

[Package R3CPET version 1.20.0 Index]