# Quantify and Annotate Short Reads in R

## Documentation for package ‘QuasR’ version 1.28.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

QuasR-package | Quantify and Annotate Short Reads in R
alignments | qProject objects
alignments-method | qProject objects
alignmentStats | Get statistics on alignments
auxiliaries | qProject objects
auxiliaries-method | qProject objects
class:qProject | qProject objects
genome-method | qProject objects
length-method | qProject objects
preprocessReads | Preprocess Short Reads
qAlign | Align reads
qCount | Quantify alignments
qExportWig | QuasR wig file export
qMeth | Quantify DNA methylation
qProfile | Quantify alignments by relative position
qProject | qProject objects
qProject-class | qProject objects
qProjectUpdate | Update qProject
qQCReport | QuasR Quality Control Report
QuasR | Quantify and Annotate Short Reads in R
show-method | qProject objects
[-method | qProject objects