dataMainPlot {PhyloProfile} | R Documentation

## Create data for main profile plot

### Description

Create data for main profile plot

### Usage

    dataMainPlot(dataHeat = NULL)

### Arguments

`dataHeat` | a data frame contains processed profiles (see ?fullProcessedProfile, ?filterProfileData)

### Value

A dataframe for plotting the phylogenetic profile, containing seed protein IDs (geneID), ortholog IDs (orthoID) together with their ncbi taxonomy IDs (ncbiID and abbrName), full names (fullName), indexed supertaxa (supertaxon), values for additional variables (var1, var2) and the aggregated values of those additional variables for each supertaxon (mVar1, mVar2), number of original and filtered co-orthologs in each supertaxon (paralog and paralogNew), number of species in each supertaxon (numberSpec) and the species that have orthologs in each supertaxon (presSpec).

### Author(s)

Vinh Tran tran@bio.uni-frankfurt.de

### See Also

`filterProfileData`

### Examples

    data("fullProcessedProfile", package="PhyloProfile")
    dataMainPlot(fullProcessedProfile)

[Package PhyloProfile version 1.2.8 Index]