getTaxonomyMatrix {PhyloProfile} | R Documentation

## Get taxonomy matrix

### Description

Get the (full or subset) taxonomy matrix from "data/taxonomyMatrix.txt" based on an input taxon list

### Usage

    getTaxonomyMatrix(subsetTaxaCheck = FALSE, taxonIDs = NULL)

### Arguments

`subsetTaxaCheck` | TRUE/FALSE subset taxonomy matrix based on input taxon IDs. Default = FALSE.
`taxonIDs` | list of input taxon IDs (e.g. ncbi1234). Default = NULL.

### Value

Data frame contains the (subset of) taxonomy matrix for list of input taxa.

### Author(s)

Vinh Tran tran@bio.uni-frankfurt.de

### Examples

    # get full pre-installed taxonomy matrix
    getTaxonomyMatrix(FALSE, NULL)
    # get taxonomy matrix for a list of taxon IDs
    taxonIDs <- c("ncbi9606", "ncbi10116")
    getTaxonomyMatrix(TRUE, taxonIDs)

[Package PhyloProfile version 1.2.8 Index]