xmlParser {PhyloProfile} | R Documentation

## Parse orthoXML input file

### Description

Parse orthoXML input file

### Usage

    xmlParser(inputFile = NULL)

### Arguments

`inputFile` | input file in xml format

### Value

A data frame of input data in long-format containing seed gene IDs ( or orthologous group IDs), their orthologous proteins together with the corresponding taxonomy IDs and values of (up to) two additional variables.

### Author(s)

Vinh Tran tran@bio.uni-frankfurt.de

### Examples

    inputFile <- system.file(
        "extdata", "test.main.xml", package = "PhyloProfile", mustWork = TRUE
    )
    xmlParser(inputFile)

[Package PhyloProfile version 1.2.8 Index]