getDataForOneOma {PhyloProfile} | R Documentation

## Get OMA info for a query protein and its orthologs

### Description

Get taxonomy IDs, sequences, length and annotations for an OMA orthologous group (or OMA HOG).

### Usage

    getDataForOneOma(seedID = NULL, orthoType = "OG")

### Arguments

`seedID` | OMA protein ID
`orthoType` | type of OMA orthologs ("OG" or "HOG"). Default = "OG".

### Value

Data frame contains info for all sequences of the input OMA group (or HOG). That info contains the protein IDs, taxonomy IDs, sequences, lengths, domain annotations (tab delimited) and the corresponding seed ID.

### Author(s)

Vinh Tran tran@bio.uni-frankfurt.de

### Examples

    print("Uncomment the following line to run the function")
    # getDataForOneOma("HUMAN29397", "OG")

[Package PhyloProfile version 1.2.8 Index]