getDendrogram {PhyloProfile} | R Documentation

## Plot dendrogram tree

### Description

Plot dendrogram tree

### Usage

    getDendrogram(dd = NULL)

### Arguments

`dd` | dendrogram object (see ?clusterDataDend)

### Value

A dendrogram plot for the genes in the input phylogenetic profiles.

### Author(s)

Vinh Tran tran@bio.uni-frankfurt.de

### See Also

`clusterDataDend`

### Examples

    data("finalProcessedProfile", package="PhyloProfile")
    data <- finalProcessedProfile
    profileType <- "binary"
    profiles <- getDataClustering(
        data, profileType, var1AggregateBy, var2AggregateBy)
    distMethod <- "mutualInformation"
    distanceMatrix <- getDistanceMatrix(profiles, distMethod)
    clusterMethod <- "complete"
    dd <- clusterDataDend(distanceMatrix, clusterMethod)
    getDendrogram(dd)

[Package PhyloProfile version 1.2.8 Index]