getFastaFromFile {PhyloProfile} | R Documentation

## Get fasta sequences from main input file in multi-fasta format

### Description

Get fasta sequences from main input file in multi-fasta format

### Usage

    getFastaFromFile(seqIDs = NULL, concatFasta = NULL)

### Arguments

`seqIDs` | list of sequences IDs. Set seqIDs = "all" if you want to get all fasta sequences from the concatenated input fasta file.
`concatFasta` | input concatenated fasta file.

### Value

A dataframe with one column contains sequences in fasta format.

### Author(s)

Vinh Tran tran@bio.uni-frankfurt.de

### Examples

    concatFasta <- system.file(
        "extdata", "fastaFiles/concatenatedFile.fa",
        package = "PhyloProfile", mustWork = TRUE
    )
    getFastaFromFasInput("all", concatFasta)

[Package PhyloProfile version 1.2.8 Index]