\name{PhyloProfilenews}
\title{PhyloProfile news}
\encoding{UTF-8}

\section{Version 1.2.8}{
  \itemize{
    \item Added new NCBI taxonomy ranks (e.g. biotype, isolate, pathogroup, ...)
    \item Added function to reset taxonomy data
  }
}

\section{Version 1.2.7}{
  \itemize{
    \item Solved problem with new NCBI taxonomy rank "clade" by replace them with "norank"
  }
}

\section{Version 1.2.6}{
  \itemize{
    \item Fixed bug customized profile of subset of taxa not clickable
  }
}

\section{Version 1.2.4}{
  \itemize{
    \item Fixed bug checking invalid taxon IDs
  }
}

\section{Version 1.2.1}{
  \itemize{
    \item Fixed bug in rankIndexing and processNcbiTaxonomy
    \item Improved check for invalid input taxon IDs
  }
}

\section{Version 1.1.12}{
  \itemize{
    \item Added pseudo IDs for Holozoa and Holomycota clades and their non-NCBI sub-clades
  }
}

\section{Version 1.1.11}{
  \itemize{
    \item Increased the resolution of the phylostratigraphy function
  }
}

\section{Version 1.1.10}{
  \itemize{
    \item Improved the rank indexing function
  }
}

\section{Version 1.1.6}{
  \itemize{
    \item Removed grDevices, grid, stats, utils from Imports list in DESCRIPTION
  }
}

\section{Version 1.1.5}{
  \itemize{
    \item Added progress indicators for data loading and processing steps
    \item Removed shinycssloaders
  }
}

\section{Version 1.1.3}{
  \itemize{
    \item Fixed bug listing taxa by selecting a supertaxon from a higher level
    \item Added message for downloading preprocessed data
  }
}

\section{Version 1.1.2}{
  \itemize{
    \item Fixed bug sorting taxa when taxonomy rank is set as strain
  }
}

\section{Version 1.1.1}{
  \itemize{
    \item Commented examples of OMA parser functions
    \item Turned off tests for OMA parser functions
  }
}

\section{Version 0.99.31}{
  \itemize{
    \item Submitted to Bioconductor
  }
}