OmnipathR               The OmnipathR package
get_annotation_databases
                        Get the different annotation databases
                        integrated in Omnipath
get_complex_genes       Get all the molecular complexes for a given
                        gene(s)
get_complexes_databases
                        Get the different complexes databases
                        integrated in Omnipath
get_interaction_databases
                        Get the different interaction databases
get_intercell_categories
                        Get the different intercell categories
                        described in Omnipath
get_intercell_classes   Get the different intercell main classes
                        described in Omnipath
get_ptms_databases      Get Post-translational modification (PTMs)
                        databases
get_signed_ptms         get signs for ptms interactions
import_AllInteractions
                        Imports from Omnipath webservice all the
                        available interactions from the different
                        datasets
import_KinaseExtra_Interactions
                        Imports from Omnipath webservice the
                        interactions from kinaseextra dataset
import_LigrecExtra_Interactions
                        Imports from Omnipath webservice the
                        interactions from ligrecextra dataset
import_Omnipath_Interactions
                        Import Omnipath interaction database
import_Omnipath_PTMS    Import Omnipath post-translational
                        modifications (PTMs)
import_Omnipath_annotations
                        Import Omnipath Annotations
import_Omnipath_complexes
                        Import Omnipath Complexes
import_Omnipath_intercell
                        Import Omnipath Intercell Data
import_PathwayExtra_Interactions
                        Imports from Omnipath webservice the
                        interactions from Pathwayextra dataset
import_TFregulons_Interactions
                        Imports from Omnipath webservice the
                        interactions from Dorothea dataset
import_miRNAtarget_Interactions
                        Imports from Omnipath webservice the
                        interactions from miRNAtarget dataset
interaction_graph       Build Omnipath interaction graph
printPath_es            print network paths given by edge sequence
printPath_vs            print networks paths given by node sequence
print_interactions      print interactions
ptms_graph              Post-translational modifications (PTMs) graph
