validSeqlevels {ORFik} | R Documentation

## Helper function to find overlaping seqlevels

### Description

Keep only seqnames in reads that are in grl Useful to avoid seqname warnings in bioC

### Usage

    validSeqlevels(grl, reads)

### Arguments

`grl` | a `GRangesList` or GRanges object
`reads` | a GRanges, GAlignment or GAlignmentPairs object

### Value

a character vector of valid seqlevels

### See Also

Other validity: `checkRFP()`, `checkRNA()`, `is.ORF()`, `is.gr_or_grl()`, `is.grl()`, `is.range()`, `validGRL()`

[Package ORFik version 1.8.6 Index]