QCstats {ORFik} | R Documentation

## Load ORFik QC Statistics report

### Description

Loads the pre / post alignment statistcs made in ORFik.

### Usage

    QCstats(df, path = paste0(dirname(df$filepath[1]), "/QC_STATS/STATS.csv"))

### Arguments

`df` | an ORFik `experiment`
`path` | path to QC statistics report, default: paste0(dirname(df$filepath[1]), "/QC_STATS/STATS.csv")

### Details

The ORFik QC uses the aligned files (usually bam files), fastp and STAR log files combined with annotation to create relevant statistics.

### Value

data.table of QC report or NULL if not exists

### See Also

Other QC report: `QCplots()`, `QCreport()`

### Examples

    df <- ORFik.template.experiment()[3,]
    ## First make QC report
    # QCreport(df)
    # stats <- QCstats(df)

[Package ORFik version 1.8.6 Index]