shiftPlots {ORFik} | R Documentation

## Plot shifted heatmaps per library

### Description

A good validation for you p-shifting, to see shifts are corresponding and close to the CDS TIS.

### Usage

    shiftPlots(
      df,
      output = NULL,
      title = "Ribo-seq",
      scoring = "transcriptNormalized",
      addFracPlot = TRUE,
      BPPARAM = bpparam()
    )

### Arguments

`df` | an ORFik `experiment`
`output` | name to save file, full path. (Default NULL) No saving.
`title` | Title for top of plot, default "Ribo-seq". A more informative name could be "Ribo-seq zebrafish Chew et al. 2013"
`scoring` | which scoring scheme to use for heatmap, default "transcriptNormalized". Some alternatives: "sum", "zscore".
`addFracPlot` | logical, default TRUE, add positional sum plot on top per heatmap.
`BPPARAM` | how many cores/threads to use? default: bpparam()

### Value

a ggplot2 grob object

### Examples

    df <- ORFik.template.experiment()
    df <- df[3,] #lets only p-shift RFP sample at index 3
    #shiftFootprintsByExperiment(df, output_format = "bedo)
    #shiftPlots(df, title = "Ribo-seq Human ORFik et al. 2020")

[Package ORFik version 1.8.6 Index]