makeExonRanks {ORFik} | R Documentation

## Make grouping by exons ranks

### Description

There are two ways to make vector of exon ranking: 1. Iterate per exon in ORF, byTranscript = FALSE 2. Iterate per ORF in transcript, byTranscript = TRUE.

### Usage

    makeExonRanks(grl, byTranscript = FALSE)

### Arguments

`grl` | a `GRangesList`
`byTranscript` | logical (default: FALSE), groups orfs by transcript name or ORF name, if ORfs are by transcript, check duplicates.

### Details

Either by transcript or by original groupings. Must be ordered, so that same transcripts are ordered together.

### Value

an integer vector of indices for exon ranks

[Package ORFik version 1.8.6 Index]