setupRawContrastObject {NormalyzerDE} | R Documentation

## Prepare SummarizedExperiment object for statistics data

### Description

Prepare SummarizedExperiment object for statistics data

### Usage

    setupRawContrastObject(dataPath, designPath, sampleColName)

### Arguments

`dataPath` | Path to raw data matrix
`designPath` | Path to design matrix
`sampleColName` | Name for column in design matrix containing sample names

### Value

experimentObj Prepared instance of SummarizedExperiment

### Examples

    data_path <- system.file(package="NormalyzerDE", "extdata", "tiny_data.tsv")
    design_path <- system.file(package="NormalyzerDE", "extdata", "tiny_design.tsv")
    sumExpObj <- setupRawContrastObject(data_path, design_path, "sample")

[Package NormalyzerDE version 1.6.0 Index]