computeLibSizeChrom {NADfinder} | R Documentation

## Perform overlap queries between reads and genome by sliding windows Count reads over sliding windows.

### Description

Perform overlap queries between reads and genome by sliding windows Count reads over sliding windows.

### Usage

    computeLibSizeChrom(aln_list)

### Arguments

`aln_list` | a list.

### Value

A RangedSummarizedExperiment object with chromosome-level depth The assays slot holds the counts, rowRanges holds the annotation from the sliding widows of genome. metadata contains lib.size.chrom for holding chromosome-level sequence depth

### Author(s)

Jun Yu,Hervé Pagès and Julie Zhu

[Package NADfinder version 1.12.0 Index]