mulOptPars {Mulcom} | R Documentation

## MulCom Parameter Optimization

### Description

Function to optimize Mulcom parameter for maximim nuber of genes with a user defined FDR

### Usage

       mulOptPars(opt, ind, ths)

### Arguments

`opt` | an MulCom optimization object
`ind` | index corresponding to the comparison
`ths` | a threshold for the FDR optimization, default is 0.05

### Details

`mulOptPars` MulCom optimization function to identify best parameters

### Author(s)

Claudio Isella, claudio.isella@ircc.it

### Examples

    data(benchVign)
    mulcom_perm <- mulPerm(Affy, Affy$Groups, 10, 7)
    #mulcom_opt <- mulOpt(mulcom_perm, seq(0.1, 0.5, 0.1), seq(1, 3, 0.1))
    #optThs <- mulOptPars(mulcom_opt, 1, 0.05)

[Package Mulcom version 1.38.0 Index]