URA {MoonlightR} | R Documentation

## URA Upstream Regulator Analysis

### Description

This function carries out the upstream regulator analysis

### Usage

    URA(dataGRN, DEGsmatrix, BPname, nCores = 1)

### Arguments

`dataGRN` | output GNR function
`DEGsmatrix` | output DPA function
`BPname` | biological processes
`nCores` | number of cores to use

### Value

an adjacent matrix

### Examples

    dataDEGs <- DEGsmatrix
    dataGRN <- GRN(TFs = rownames(dataDEGs)[1:100],
    DEGsmatrix = dataDEGs,
    DiffGenes = TRUE,
    normCounts = dataFilt)
    dataURA <-URA(dataGRN = dataGRN,
    DEGsmatrix = dataDEGs,
    BPname = c("apoptosis",
    "proliferation of cells"))

[Package MoonlightR version 1.14.1 Index]