DPA {MoonlightR} | R Documentation

## DPA

### Description

This function carries out the differential phenotypes analysis

### Usage

    DPA(dataType, dataFilt, dataConsortium = "TCGA", fdr.cut = 0.01,
      logFC.cut = 1, diffmean.cut = 0.25, samplesType, colDescription,
      gset, gsetFile = "gsetFile.RData")

### Arguments

`dataType` | selected
`dataFilt` | obtained from getDataTCGA
`dataConsortium` | is TCGA or GEO, default TCGA
`fdr.cut` | is a threshold to filter DEGs according their p-value corrected
`logFC.cut` | is a threshold to filter DEGs according their logFC
`diffmean.cut` | diffmean.cut for DMR
`samplesType` | samplesType
`colDescription` | colDescription
`gset` | gset
`gsetFile` | gsetFile

### Value

result matrix from differential phenotype analysis

### Examples

    dataDEGs <- DPA(dataFilt = dataFilt, dataType = "Gene expression")

[Package MoonlightR version 1.14.1 Index]