nbOccByGeneInComp {MineICA} | R Documentation

## nbOccByGeneInComp

### Description

For each feature/gene, this function returns the indices of the components they contribute to.

### Usage

    nbOccByGeneInComp(Slist, cutoff, sel)

### Arguments

`Slist` | A list whose each element contains projection values of features/genes on a component.
`cutoff` | A threshold to be used to define a gene as contributor
`sel` | A list whose each element contains projection values of contributing features/genes on a component (the difference with arg `Slist` is that `sel` is already restricted to the contributing genes).

### Value

This function returns a list which gives for each feature/gene the indices of the components it contributes to.

### Author(s)

Anne Biton

### Examples

     c1 <- rnorm(100); names(c1) <- paste("g",100:199,sep="")
     c2 <- rnorm(100); names(c2) <- paste("g",1:99,sep="")
     MineICA:::nbOccByGeneInComp(Slist=list(c1,c2), cutoff= 0.5)

[Package MineICA version 1.28.0 Index]