Preprocess_MAdata_Cancer {MethylMix} | R Documentation

## The Preprocess_MAdata_Cancer function

### Description

Internal. Pre-process gene expression data for cancer samples.

### Usage

    Preprocess_MAdata_Cancer(CancerSite, Directory, File,
      MissingValueThresholdGene = 0.3, MissingValueThresholdSample = 0.1)

### Arguments

`CancerSite` | TCGA code for the cancer site.
`Directory` | Directory.
`File` | File.
`MissingValueThresholdGene` | threshold for missing values per gene. Genes with a percentage of NAs greater than this threshold are removed. Default is 0.3.
`MissingValueThresholdSample` | threshold for missing values per sample. Samples with a percentage of NAs greater than this threshold are removed. Default is 0.1.

### Value

The data matrix.

[Package MethylMix version 2.18.0 Index]