Package: MEDIPS
Type: Package
Title: DNA IP-seq data analysis
Version: 1.40.0
Date: 2017-07-25
Author: Lukas Chavez, Matthias Lienhard, Joern Dietrich, Isaac Lopez Moyado
Maintainer: Lukas Chavez <lukaschavez@ucsd.edu>
Description: MEDIPS was developed for analyzing data derived from
        methylated DNA immunoprecipitation (MeDIP) experiments followed
        by sequencing (MeDIP-seq). However, MEDIPS provides functionalities for the analysis of any kind of quantitative
        sequencing data (e.g. ChIP-seq, MBD-seq, CMS-seq and others)
        including calculation of differential coverage between groups
        of samples and saturation and correlation analysis.
License: GPL (>=2)
LazyLoad: yes
Depends: R (>= 3.0), BSgenome, Rsamtools
Imports: GenomicRanges, Biostrings, graphics, gtools, IRanges, methods,
        stats, utils, edgeR, DNAcopy, biomaRt, rtracklayer,
        preprocessCore
Suggests: BSgenome.Hsapiens.UCSC.hg19, MEDIPSData, BiocStyle
biocViews: DNAMethylation, CpGIsland, DifferentialExpression,
        Sequencing, ChIPSeq, Preprocessing, QualityControl,
        Visualization, Microarray, Genetics, Coverage,
        GenomeAnnotation, CopyNumberVariation, SequenceMatching
NeedsCompilation: no
Packaged: 2020-04-28 02:46:46 UTC; biocbuild
git_url: https://git.bioconductor.org/packages/MEDIPS
git_branch: RELEASE_3_11
git_last_commit: a95e972
git_last_commit_date: 2020-04-27
Date/Publication: 2020-04-27
Built: R 4.0.0; ; 2020-04-28 16:39:56 UTC; windows
