runBlockFinder {MEAL} | R Documentation

## Run blockFinder

### Description

Run blockFinder

### Usage

    runBlockFinder(
      set,
      model,
      coefficient = 2,
      blockfinder_cutoff = 0.1,
      num_permutations = 0,
      resultSet = FALSE,
      verbose = FALSE,
      ...
    )

### Arguments

`set` | `GenomicRatioSet`, `eSet` derived object or `SummarizedExperiment`
`model` | Model matrix or formula to get model matrix from `set`.
`coefficient` | Numeric with the column of model matrix used in the analysis. (Default: 2)
`blockfinder_cutoff` | Numeric with the minimum cutoff to include a probe in a block. (Default: 0.1)
`num_permutations` | Numeric with the number of permutations run to compute the blocks p-value. (Default: 0)
`resultSet` | Should results be encapsulated in a `resultSet`? (Default: TRUE)
`verbose` | Logical value. Should the function be verbose? (Default: FALSE)
`...` | Further arguments passed to `blockFinder`.

### Details

This function has been deprecated and will be defunct in the new version.

### Value

data.frame or `resultSet` with the result of `blockFinder`

### See Also

`blockFinder`

[Package MEAL version 1.18.0 Index]