ReadRRA {MAGeCKFlute} | R Documentation

## Read gene summary file in MAGeCK-RRA results

### Description

Read gene summary file in MAGeCK-RRA results

### Usage

    ReadRRA(gene_summary, score = c("lfc", "rra")[1])

### Arguments

`gene_summary` | A data frame or a file path to gene summary file generated by MAGeCK-RRA.
`score` | "lfc" (default) or "rra", specifying the score type.

### Details

If the score type is equal to lfc, then LFC will be returned. If the score type is rra, the log10 transformed RRA score will be returned. For FACS-based CRISPR screens, rra score is not recommended.

### Value

A data frame including three columns, including "id", "LFC" and "FDR".

### Author(s)

Wubing Zhang

### Examples

    file1 = file.path(system.file("extdata", package = "MAGeCKFlute"),
    "testdata/rra.gene_summary.txt")
    gdata = ReadRRA(file1)
    head(gdata)

[Package MAGeCKFlute version 1.8.0 Index]