EBF1_disc1              EBF1_disc1 transcription factor position weight
                        matrix A dataset of composition probabilities
                        of A, C, G and T in 10 positions of the motif.
GetConsensusSeq         Function for obtaining consensus sequence of
                        DNA sequence symbols from a PWM matrix
UMI                     An example of the position weight matrix of the
                        bases in the first 30 positions from ends of
                        sequenced reads (together with the barcode) A
                        dataset of composition probabilities of A, C, G
                        and T in 30 positions from the 5' end of reads.
aRxiv                   Counts of the aRxiv field categories of 4
                        UChicago Statistics professors. A dataset of
                        compositional counts of 10 aRxiv field
                        categories for 4 professors' publications in
                        aRxiv.
get_logo_heights        Get heights of logos in nlogomaker() under
                        different scoring schemes
get_viewport_logo       Function for creating a multi-panel logo
                        viewport
himalayan_fauna         Proportional abundances of different bird
                        species in the Himalayan mountains A dataset of
                        proportional composition of 140 bird species in
                        3 regions of the Himalayas.
histone_marks           Compositional data of histone marks in
                        different regions of genome along with
                        background information A list containing two
                        matrices storing composition of 5 histone marks
                        (H3K4ME1, H3K4ME2, H3K4ME3, H3AC, H4AC) in 5
                        regions of the genome
logo_pssm               Function to plot PSSM logo plot visualization.
logomaker               Create logo plots from aligned sequences or
                        positional frequency (weight) matrix
makemylogo              Logo maker for a given English alphanumeric
                        with common punctuations
mutation_sig            Compositional mutational signature data, with
                        mismatch and flanking base frequencies reported
                        A dataset of compositional weights for
                        mismatches in the "0"the position (center of
                        signature) and that of the bases A, C, G, T for
                        two left flanking bases (-1, -2) and two right
                        flanking bases (1, 2).
nlogomaker              Main workhorse function that builds negative
                        logo plots
pssm                    Position specific scoring matrix data A dataset
                        of position specific sores of various amino
                        acids in 9 positions binding domain.
seqlogo_example         An example of the position weight matrix taken
                        from seqLogo package A dataset of composition
                        probabilities of A, C, G and T in 8 positions
                        of the motif.
