userSets {LOLA} | R Documentation

## An example set of regions, sampled from the example database.

### Description

A dataset containing a few sample regions.

### Usage

    data(sample_input)

### Format

A GRangesList object

### Value

No return value.

### Examples

    ## Not run:
    This is how I produced the sample data sets:
    dbPath = system.file("extdata", "hg19", package="LOLA")
    regionDB = loadRegionDB(dbLocation= dbPath)
    userSetA = reduce(do.call(c, (sampleGRL(regionDB$regionGRL,
    prop=c(.1,.25,.05,.05,0)))))
    userSetB = reduce(do.call(c, (sampleGRL(regionDB$regionGRL,
    prop=c(.2,.05,.05,.05,0)))))

    userSets = GRangesList(setA=userSetA, setB=userSetB)
    userUniverse = reduce(do.call(c, regionDB$regionGRL))
    save(userSets, file="sample_input.RData")
    save(userUniverse, file="sample_universe.RData")

    ## End(Not run)

[Package LOLA version 1.18.1 Index]