Package: InTAD
Type: Package
Title: Search for correlation between epigenetic signals and gene
        expression in TADs
Version: 1.8.0
Author: Konstantin Okonechnikov, Serap Erkek, Lukas Chavez
Maintainer: Konstantin Okonechnikov <k.okonechnikov@gmail.com>
Description: The package is focused on the detection of correlation between expressed genes and selected epigenomic signals i.e. enhancers obtained from ChIP-seq data within topologically associated domains (TADs). Various parameters can be controlled to investigate the influence of external factors and visualization plots are available for each analysis step.  
License: GPL (>=2)
LazyData: TRUE
Depends: R (>= 3.5), methods, S4Vectors, IRanges, GenomicRanges,
        MultiAssayExperiment, SummarizedExperiment,stats
Imports:
        BiocGenerics,Biobase,rtracklayer,parallel,graphics,mclust,qvalue,
        ggplot2,utils,ggpubr
biocViews: Epigenetics, Sequencing, ChIPSeq, RNASeq, HiC,
        GeneExpression,ImmunoOncology
VignetteBuilder: knitr
Suggests: testthat, BiocStyle, knitr, rmarkdown
RoxygenNote: 6.0.1
git_url: https://git.bioconductor.org/packages/InTAD
git_branch: RELEASE_3_11
git_last_commit: e20dc48
git_last_commit_date: 2020-04-27
Date/Publication: 2020-04-27
NeedsCompilation: no
Packaged: 2020-04-28 06:01:14 UTC; biocbuild
Built: R 4.0.0; ; 2020-04-28 17:56:22 UTC; windows
