2148b1090f8034a0ffbcc6a28fc9e7ac *DESCRIPTION
a17fa95104c91768d41f007f69b84f9e *INDEX
8ff80c63fed1256a4c3e78959b228ab3 *Meta/Rd.rds
1f87359b7330924b69f788130dac8d47 *Meta/data.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
5479bc3de00d549a180dc38914ee2e38 *Meta/hsearch.rds
0380c6dc42f2dc0a40fe068c11e235e4 *Meta/links.rds
82093a139d8d30969d9c894fedf090d0 *Meta/nsInfo.rds
a55af1f11823a69d68d72044348bd9a6 *Meta/package.rds
3ed22f7197dded3802ad8d5ddbdb6ad8 *Meta/vignette.rds
33dcdf66a5988188e8f6519846492066 *NAMESPACE
2ebe4c7cf8d1db4d767be380003460bd *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/InPAS
82ae115025eb24e14a181ff1337a576b *R/InPAS.rdb
42c734c84295fa116954e75552b1df6f *R/InPAS.rdx
875c71c35a5962e7306813868c1c42bf *data/datalist
cafef1e05d73c03e50d90e87935f9ba0 *data/utr3.danRer10.rda
ad1b6f62495ed8cceb7981b4c5573152 *data/utr3.hg19.rda
12aa976301363411d421ba9a97ffbd63 *data/utr3.mm10.rda
dc299f90f3cd31ebba0b1a75f442e54c *doc/InPAS.R
c2bf3a9f910d284b3f4606d7e38d890c *doc/InPAS.Rmd
e23b3def97e8f8b295415a7295f549d7 *doc/InPAS.html
0015487fddc81e8e1f85316ea6ab499a *doc/index.html
fd39ad651f9d1366d13a0d741098d0b3 *extdata/Baf3.extract.bedgraph
5ca9fbb2ed92f46da01127f48a5188c0 *extdata/CPs.MAQC.rda
fa1e4fe6f1c33d7ca297fa12506a0d2a *extdata/UM15.extract.bedgraph
ceeb863c3251b708f8fc30ec7266b816 *extdata/coverage.MAQC.rda
30f138b6f554fb5e304e86e2d568663f *extdata/eset.MAQC.rda
74350e6c2359aed876a3af9b030509ae *extdata/polyA.rds
7960399b72ebfd0cace25f5682a04821 *help/AnIndex
6b358d1f004e214bdf89a0686ec99a52 *help/InPAS.rdb
729cebd37eb8ce5128a3192df33deb01 *help/InPAS.rdx
d58813560cd541103479ab44e35ed266 *help/aliases.rds
053e1d67ace65ed4760e8cabdeb491fb *help/paths.rds
6d6fe39a4709d909d3ccc93bf5c7356e *html/00Index.html
91d3afe4400c7dfa7691f982dc77cdec *html/CPsite_estimation.html
420349806f5dcdc99cfbffed6f79db3f *html/CPsites.html
46ec1563192b92352fdf001c24c3b025 *html/InPAS-package.html
6299eb45ce351a5754a1573e1b88db8a *html/PAscore.html
427f8be31c2056c2b0c0497532ffeed0 *html/PAscore2.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
27da60eaf319c1519a62f15488276597 *html/UTR3TotalCoverage.html
9451cb8a8464bf444c6670c8c0469d3d *html/UTR3eSet.html
0d552043fbb3f30baadd471734f93d51 *html/UTR3usage.html
50f62805296d1c113e32b9aca1a7a39a *html/covThreshold.html
ce05de4cc78c552ccafa1bbfa5c10ee9 *html/coverageFromBedGraph.html
1d601031451c6175b9fed1c4022ff2f8 *html/coverageRate.html
f1df1958dd34563bdbdea384bde5ceee *html/depthWeight.html
255fef67cac08ce55280fa4871edf659 *html/distalAdj.html
81fc0673cee4f943e03a040b214ac713 *html/filterRes.html
70e7e8fa923d5bc82580acd907495b77 *html/fisher.exact.test.html
2e165bc1148ec5ba26ad6b2d4e4c32f4 *html/get.regions.coverage.html
35d822827e48469221ae381206a37a97 *html/getCov.html
cc9b73710390ca19ffe90b66ffc6e58c *html/getUTR3eSet.html
3d69c04f538e532cdf4c43eec1d446f8 *html/getUTR3region.html
9ebe982bc22b923ddb1690c9e89ced46 *html/inPAS.html
54daf31a461c2f678633e8e2cf5cdec3 *html/lastCDSusage.html
208fe34d6f63a21df7794b1db444bf9e *html/limmaAnalyze.html
f32a674029b184c457a6f6c1b11416c6 *html/optimalSegmentation.html
a495d930644a293ea4fbc576cfb7ecfc *html/polishCPs.html
e990dc570241c00056562c6343611f80 *html/prepare4GSEA.html
51ee2c2ed4f59511cce1db96373df1dd *html/proximalAdj.html
deb3276313ebef0868d9e3126e86926d *html/proximalAdjByCleanUpdTSeq.html
2cf8ecd7db111a804f42575938420e40 *html/proximalAdjByPWM.html
d6a771eafdb5bb46df11cdfa362b6806 *html/removeUTR3__UTR3.html
3a53d54bcec2aa554c7cd1dc912c4e85 *html/searchDistalCPs.html
b57b3f7305fb36f9a1b247e630df925c *html/searchProximalCPs.html
5d250727264eded05a39478e4852f5ac *html/seqLen.html
97b0f41839dd92245c9d2f4e89a0925c *html/singleGroupAnalyze.html
17b2e93b14a7f15d504bb2073538de1f *html/singleSampleAnalyze.html
b8b1159c43768d4d67f4676e0328dc8d *html/sortGR.html
8ff12ce0d18d5eed65a426e8ef02581f *html/testUsage.html
3c4b8beec2ea72b0f0d300a65de15cff *html/totalCoverage.html
67cf2169d13d9f26215373b7d99ffa20 *html/trimSeqnames.html
6dc3c4a1c1585618ea4f1ba8d1983fac *html/usage4plot.html
6f68deafb42d4c3b375920eb5c588626 *html/utr3.danRer10.html
4d9bbde30f7b0bd3c6c7e116e624dfca *html/utr3.hg19.html
c01d9f95ba07f3744db0dd9b9315322f *html/utr3.mm10.html
97374ce510a1a6955ec0134a843bb42d *html/utr3Annotation.html
9b2507b1a2eef771347b6e623f6a89a4 *html/utr3UsageEstimation.html
1a541399a58d93be7005bf93dfe95e65 *html/valley.html
8c91975a7167baa0f1bc102fd4a24198 *html/zScoreThrethold.html
9c0364f33917c3e3b5d5cfd94a33dd0d *unitTests/test_CPsites.R
34a65fd52a724977969eb6861dd86ed3 *unitTests/test_coverageFromBedGraph.R
3102a9d14d794b5356a01a5a326e407b *unitTests/test_getUTR3eSet.R
