hildaDiffPlot {HiLDA} | R Documentation

## Read the raw mutation data with the mutation feature vector format, estimate and plot both mutation signatures and their fractions

### Description

Read the raw mutation data with the mutation feature vector format, estimate and plot both mutation signatures and their fractions

### Usage

    hildaDiffPlot(inputG, hildaResult, sigOrder = NULL, charSize = 3)

### Arguments

`inputG` | a MutationFeatureData S4 class output by the pmsignature.
`hildaResult` | a rjags class output by HiLDA.
`sigOrder` | the order of signatures if needed (default: NULL).
`charSize` | the size of the character on the signature plot (default: 3)

### Value

a list of the signature plot and the mean difference plot.

### Examples

    load(system.file("extdata/sample.rdata", package="HiLDA"))
    inputFile <- system.file("extdata/hildaLocal.rdata", package="HiLDA")
    hildaLocal <- readRDS(inputFile)

    hildaDiffPlot(G, hildaLocal)

[Package HiLDA version 1.2.0 Index]