hlaSampleAllele {HIBAG} | R Documentation

## Get sample IDs from HLA types with a filter

### Description

Get sample IDs from HLA types limited to a set of HLA alleles.

### Usage

    hlaSampleAllele(TrueHLA, allele.limit=NULL, max.resolution="")

### Arguments

`TrueHLA` | an object of `hlaAlleleClass`
`allele.limit` | a list of HLA alleles, the validation samples are limited to those having HLA alleles in `allele.limit`, or `NULL` for no limit. `allele.limit` could be character-type, `hlaAttrBagClass` or `hlaAttrBagObj`
`max.resolution` | "2-digit", "4-digit", "6-digit", "8-digit", "allele", "protein", "2", "4", "6", "8", "full" or "": "allele" = "2-digit", "protein" = "4-digit", "full" and "" mean no limit on resolution

### Value

Return a list of sample IDs.

### Author(s)

Xiuwen Zheng

### See Also

`hlaCompareAllele`

### Examples

    # make a "hlaAlleleClass" object
    hla.id <- "A"
    hla <- hlaAllele(HLA_Type_Table$sample.id,
        HLA_Type_Table[, paste(hla.id, ".1", sep="")],
        HLA_Type_Table[, paste(hla.id, ".2", sep="")],
        locus=hla.id, assembly="hg19")
    summary(hla)

    hlaSampleAllele(hla)

    hlaSampleAllele(hla, allele.limit=c(
        "01:01","02:01","02:06", "03:01", "11:01", "23:01"))

[Package HIBAG version 1.24.0 Index]