assignDefaultMthds {GladiaTOX} | R Documentation

## Assign default processing methods

### Description

Function to assign default processing method to asid in input

### Usage

    assignDefaultMthds(asid)

### Arguments

`asid` | Integer, the asid value(s) to which assign the default methods

### Details

This function loads all components and endpoints for the given asid(s) in the database, and assigns a default set of processing methods to them.

This funciton will overwrite any previously assigned methods.

By default, each assay will receive 'none' at level 2. Level 3 data will receive, in order, 'bval.pmi' (39), 'resp.fc' (9), 'resp.log2' (7), and for endpoints with "down" analysis direction, 'resp.multneg1' (6).

### Value

None

### Examples

    ## Prepare for analysis before QC + process data
    assignDefaultMthds(asid = 1L)

    ## Process data
    gtoxRun(asid = 1L, slvl = 1, elvl = 6, mc.cores = 2)

[Package GladiaTOX version 1.4.0 Index]