tuples-squeezers {GenomicTuples} | R Documentation

## Squeeze the tuples out of a tuples-based object

### Description

S4 generic functions for squeezing the tuples out of a tuples-based object. Similar to the S4 generic functions for squeezing the ranges out of a ranged-based object, see granges and grglist.

`gtuples` returns them as a GTuples object, and `gtlist` as a GTuplesList object.

### Usage

    gtuples(x, use.mcols=FALSE, ...)
    gtlist(x, use.mcols=FALSE, ...)

### Arguments

`x` | A tuples-based object.
`use.mcols` | `TRUE` or `FALSE` (the default). Whether the metadata columns on `x` (accessible with `mcols(x)`) should be propagated to the returned object or not.
`...` | Additional arguments, for use in specific methods.

### Details

The MethylationTuples (https://github.com/PeteHaitch/MethylationTuples) package defines and document methods for various types of tuples-based objects. Other Bioconductor packages might as well.

Note that these functions can be seen as a specific kind of object getters as well as functions performing coercion.

### Value

A GTuples object for `gtuples`.

A GTuplesList object for `gtlist`.

If `x` is a vector-like object, the returned object is expected to be parallel to `x`, that is, the i-th element in the output corresponds to the i-th element in the input. If `x` has names on it, they're propagated to the returned object. If `use.mcols` is TRUE and `x` has metadata columns on it (accessible with `mcols(x)`), they're propagated to the returned object.

### Author(s)

Peter Hickey

### See Also

- GTuples and GTuplesList objects.

### Examples

    ## See ?MethPat in the MethylationTuples package (GitHub-only package) for some
    ## examples.

[Package GenomicTuples version 1.22.1 Index]