LPSData {GateFinder} | R Documentation

## LPSData

### Description

A dataset of two sets of scores (particularly, correlation with protection against HIV and overlap with the Naive T-cell population) assigned to immunophenotypes measured by flow cytometry. 10 markers were measured: KI-67, CD28, CD45RO, CD8, CD4, CD57, CCR5, CD27, CCR7, and CD127.

### Usage

    data(LPSData)

### Details

This dataset consists of a matrix and two vectors:

`rawdata` The transformed expression values extracted from the original FCS file.

`prop.markers` the indexes of markers that should be considered for the gating strategy.

`marker.names` name of all markers (columns of matrix rawdata).

### Author(s)

Nima Aghaeepour <naghaeep@gmail.com> and Erin F. Simonds <erin.simonds@gmail.com>.

### References

Bendall, Sean C., et al. "Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum." Science 332.6030 (2011): 687-696.

### Examples

    library(flowCore)

    data(LPSData)

    plot(exprs(rawdata)[,15:16],xlab=marker.names[15],ylab=marker.names[16])

[Package GateFinder version 1.8.0 Index]