sampleInfo {GSALightning} | R Documentation

## Sample Information for the Breast Cancer Data from The Cancer Genome Atlas (TCGA)

### Description

This is the subject information data for the breast cancer expression data set obtained from The Cancer Genome Atlas (TCGA) consortium, and processed by the Pan-Cancer project group. The data was downloaded originally using the ELMER Bioconductor package.

### Usage

    data("sampleInfo")

### Value

A data frame. The element "TN" is the subject label ("Experiment" = cancer patients, and "Control" = the control subjects).

### References

The Cancer Genome Atlas (2012) Comprehensive molecular characterization of human colon and rectal cancer. Nature 487:330-337.

Weinstein, John N., et al. "The cancer genome atlas pan-cancer analysis project." Nature genetics 45.10 (2013): 1113-1120.

Yao, L., et al. "Inferring regulatory element landscapes and transcription factor networks from cancer methylomes." Genome biology 16.1 (2015): 105-105.

### Examples

    data(sampleInfo)
    str(sampleInfo)

[Package GSALightning version 1.16.0 Index]