0f13879758690de13e08cdbbb64322d7 *CITATION
e4b70e85eae2c10e9972518cdeaa6f23 *DESCRIPTION
757d3fc601278b9f0538f35b5eb1c5cc *INDEX
825582a0b362ed3bd213f06992a28a9d *Meta/Rd.rds
c7a038e1dd7eee0f024058196657f1dd *Meta/data.rds
f51f28e08b4fc215e2f6955f2c2ae531 *Meta/features.rds
0d6eaad530d4bd8a85f23b0f45e1b34b *Meta/hsearch.rds
886f6c7cf8daf78b2a183c1c8d5190a2 *Meta/links.rds
e68f75b332f0bc55fbdce6d2c1584343 *Meta/nsInfo.rds
dd286b13c0ab127a82b9cc0d2bca6511 *Meta/package.rds
baa07042e74f6dbcd921d3a9232cda44 *Meta/vignette.rds
a2877147c439639af81b84f47783bd6a *NAMESPACE
ebf0fc819595d631b8bf280c4b049940 *R/FourCSeq
7245e1b3eaa9b2fa41ed8b4ed05e12c0 *R/FourCSeq.rdb
2864406c7c07bee5df52de7ba2d2eb45 *R/FourCSeq.rdx
e712884310e3ae0225ae27d9b4125f3d *data/datalist
0789fe12ab99c865a0bbfad6109dd70a *data/fc.rda
16ca8c7048b6cc6872ef0b622068a9bc *data/fcf.rda
46741e4e6b3572937bfe4e70399650fa *doc/FourCSeq.R
d283e07caec6ca5a8ffaa0d09cb8fd77 *doc/FourCSeq.Rnw
a686b54215fb91f309f03bd2bfde67f7 *doc/FourCSeq.pdf
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a47189afb85d952ce3f8c9029c5426ae *extdata/bam/CRM_ap_ApME680_MESO_6-8h_1_testdata.bam
e66069ad85339fc6d53c82fd15331b9e *extdata/bam/CRM_ap_ApME680_MESO_6-8h_1_testdata.bam.bai
71abbf35f0027ba4136a183be67105b3 *extdata/bam/CRM_ap_ApME680_MESO_6-8h_2_testdata.bam
b9ae7b5dd37a082cde997aeeecd30b8a *extdata/bam/CRM_ap_ApME680_MESO_6-8h_2_testdata.bam.bai
9995280b16d4dd17a2f6d469969d70bb *extdata/bam/CRM_ap_ApME680_WE_3-4h_1_testdata.bam
0cc7e25225dcdea740c8eb34c00cdaee *extdata/bam/CRM_ap_ApME680_WE_3-4h_1_testdata.bam.bai
fbe26ce19c28dabbf2e4091a1badd2d4 *extdata/bam/CRM_ap_ApME680_WE_3-4h_2_testdata.bam
0d76977b2e36046cc176112776c5fa4e *extdata/bam/CRM_ap_ApME680_WE_3-4h_2_testdata.bam.bai
d7271804926af64db2e5967c5dcd973b *extdata/bam/CRM_ap_ApME680_WE_6-8h_1_testdata.bam
89cda3597b0911a9021eb51a8d5a5620 *extdata/bam/CRM_ap_ApME680_WE_6-8h_1_testdata.bam.bai
26631755da6e4834f94337426858e559 *extdata/bam/CRM_ap_ApME680_WE_6-8h_2_testdata.bam
36692e73c13be4c94e3c355b9a1a697b *extdata/bam/CRM_ap_ApME680_WE_6-8h_2_testdata.bam.bai
255a24367518eb0f66ac409b42de54f3 *extdata/dm3_chr2L_1-6900.fa
22c667eddcaa6a93ba036d92d619b3d9 *extdata/primer.fa
52cdc74e647c9f0cd992a5b5c8e56263 *extdata/python/demultiplex.py
d3bca03dda0cf76445b40efb8a81d07f *help/AnIndex
bc848bf192f9b090bb3dc49180028ebc *help/FourCSeq.rdb
fadf245e67338f1f8bdcb58dda81e870 *help/FourCSeq.rdx
6be1fc6ebe958135a95c205450ba30bf *help/aliases.rds
ed95892ac5a2716fc5f720fca367ab4c *help/paths.rds
24f9bad76a3374615bdc61f1e3021652 *html/00Index.html
5cf1d79de99343dc060d9319d54908e3 *html/FourC.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
8c7fe49f1ee2bf94650726a6cba413b9 *html/addFragments.html
68f64a61165108e5eda5abbb387b8aff *html/addPeaks.html
e0f4b0afac56cda9aff1a26170a12a77 *html/addViewpointFrags.html
c401e8fdcc1ac2b4ab08caea5ceacc63 *html/combineFragEnds.html
f6583c9ca33a3da19f5205d3b28b1835 *html/countFragmentOverlaps.html
b7a2745980b52431eab3f6391fbf29a4 *html/countFragmentOverlapsSecondCutter.html
2d833da2ca6cf749de8c621b633a949f *html/distFitMonotone.html
b74afffbf28aca7162638dbed1169966 *html/distFitMonotoneSymmetric.html
67adf9b97d5ad573a8ff3384b9763eff *html/fc.html
c852ff2e2ea8a3a195a7f583697294a3 *html/fcf.html
221c9db31f0b2664121a8a328c6bb8fc *html/findViewpointFragments.html
f2bf9496220511711378a8f9f46f93ad *html/getAllResults.html
8636c9bcb4cd534bbe9d4ec4efe0f4e2 *html/getDifferences.html
093bc26ec8535ab2bec60c6504222e9d *html/getDistAroundVp.html
d045bfc6c7d9d03f50c67c1a8e9def0f *html/getNormalizationFactors.html
2ffed223864c420d1dc6fafa5ac675d0 *html/getReferenceSeq.html
11fcabe98c6289a71f7f88cbe3a5bd35 *html/getZScores.html
c7cf53b582879d12689dd2f9c75a7098 *html/normalizeRPM.html
d69f635eb83bb6458f340c44484afe69 *html/plotDifferences.html
dfe9a161c9899789c4d3764dfe79c14c *html/plotFits.html
8efb9e0a05e1541ea1656ece411f267f *html/plotNormalizationFactors.html
9970bce74bbd566be1b879021a350e58 *html/plotScatter.html
24489436d45d7fd07b788776b2760ede *html/plotZScores.html
99143958234e0bfdcaa8160983b24f79 *html/smoothCounts.html
46e0b6de85044cc7eca165f21724fe93 *html/smoothHitPerCent.html
af4c5534e1f003cd256963803dd02380 *html/writeTrackFiles.html
