391f8a3899bc796bbed73c5b3212a2d8 *CITATION
da0dfb137a97c459820afe4dcfa1f261 *DESCRIPTION
ae644fcd49997d3efa297b417ab4100f *INDEX
c63628e68747c6637dbb843085b72d9b *Meta/Rd.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
05ed7eae219f39c5fa43242c4ba237a7 *Meta/hsearch.rds
1879df916128ee464e5ce3e17e2a2301 *Meta/links.rds
f0cca450aa1859d6bf8c1cb117d0e91c *Meta/nsInfo.rds
2fd92dc0738ef7d32b57c5c025e9bbab *Meta/package.rds
05958ad4af21e6899c5eb77d21445f06 *Meta/vignette.rds
cd06ca101906c87168e789504fdd80f3 *NAMESPACE
ebf0fc819595d631b8bf280c4b049940 *R/DiffLogo
a1253ac5abc18c610ff8efcdf10e87c3 *R/DiffLogo.rdb
88bcf6b99726bb73642c7ed3b8e24830 *R/DiffLogo.rdx
e27c8b408c4ec4b44194743158c837c0 *doc/DiffLogoBasics.R
68c883ea98ff6663d211382a28a0038c *doc/DiffLogoBasics.Rnw
bd06d924c4b747744b0f5afd99ab1ce7 *doc/DiffLogoBasics.pdf
187d017a70ac056aad2a2f75d7648a88 *doc/index.html
9e64524098dcc3547b0a5033d37a3984 *extdata/alignments/F-box_bacteria.seq.fa
b638c19a42f513e456205f9f25794d2f *extdata/alignments/F-box_fungi.seq.fa
9c3c87fdf80fefc6cf3d20485aa94743 *extdata/alignments/F-box_metazoa.seq.fa
81c829501e6d19ac9ebe29dc3eecf303 *extdata/alignments/F-box_viridiplantae.seq.fa
45eea31652c9bf73aff2c145ab10ce97 *extdata/alignments/Mad.txt
707dbdd70ccc0cc51590f505e03f6a70 *extdata/alignments/Max.txt
b411ab2abc76e3437ccd6e818df31d54 *extdata/alignments/Myc.txt
d6422185297c2583f4419f467aec0574 *extdata/alignments/calamodulin_1.txt
4d0f44df6595197edd2b21d3549b4e57 *extdata/alignments/calamodulin_2.txt
2cec07f111c114b62e74dc5fda6d5b17 *extdata/alignments/phosphorylation_1.txt
610cceb5049e7cca41221bce75f23d95 *extdata/alignments/phosphorylation_2.txt
c78d0348b409bfaf488df306859666da *extdata/alignments/ubiquitination_1.txt
cdce4193c5fadfe94bc64bd20fd082b5 *extdata/alignments/ubiquitination_2.txt
8c38fdb2ea172dabd1ab4c45ddf5a4cb *extdata/homer/CTCF_SatelliteElement_Zf_CD4.motif
774f4bdd1a44d8c272a63396d7e9456c *extdata/homer/CTCF_Zf_CD4.motif
eaaac1b0e8624dce03d814d29ab7a8ac *extdata/homer/Max.motif
fd5d4c365e7e5de7f31f2adcc8df2a53 *extdata/homer/c-Myc.motif
ccc5a3fef2d1a0e70be046cce43dc22e *extdata/pfm/ctcf_jaspar.pfm
6093b56d5f72163054afddfa7e1013e3 *extdata/pwm/GM12878.pwm
ac0ed6904d023f00b38f953060434399 *extdata/pwm/H1-hESC.pwm
5c049781855e3d08d476eb735e438438 *extdata/pwm/HUVEC.pwm
56e78321b415f4e5f39cb226ddb3915c *extdata/pwm/HeLa-S3.pwm
f340a2bd526bb8cfe484a06f41e0923e *extdata/pwm/HepG2.pwm
a55a478ca869b172f945c7e004de9aba *extdata/pwm/K562.pwm
7256e36aa113e2ef2f25345cdf816682 *extdata/pwm/MCF7.pwm
d7bade5c657d185fc7c4b7e15199183b *extdata/pwm/NHEK.pwm
1e417b7456962e38375fdb5de6c67bb4 *extdata/pwm/ProgFib.pwm
d1d4f1b8a6f4aa46a8181c7d85f2d199 *help/AnIndex
5c46c372bde590b14e9fa1475b9c3140 *help/DiffLogo.rdb
677e57192852fa0e17972e98e4f0fbbd *help/DiffLogo.rdx
c90c7513d6ade9fb9f4d8e8de69a2647 *help/aliases.rds
87dad36554d6195a7f111dadbf01930f *help/paths.rds
1ca69fe29ff8b15d948d232535f29dbd *html/00Index.html
a7a3df835af85d33b38fcde303b2c1d4 *html/ASN.html
3ebfa6977f293e78950091b692dc6574 *html/Alphabet.html
ee9abbcca06c09c38fe560129061a4b6 *html/DNA.html
bcb40a26a4023587b24f510f295989af *html/FULL_ALPHABET.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
2bbf3af6abb857021a3ac64757956443 *html/RNA.html
b0c3c4dd461d0c3c27855c5cab57c308 *html/alignPwmSets.html
1e534e67df56d81e7e8b184934480820 *html/baseDistributionPwm.html
6bd397ed126c1c353b2f5ced2c8d44f7 *html/calculatePvalue.html
054c5bd60cb11428b97df926630d76c3 *html/createDiffLogoObject.html
4d2cd9c634ad51eb9dc5d17e587fb609 *html/diffLogo.html
715e692bba3bb4beb104a4351271203e *html/diffLogoFromPwm.html
809cf9ccd3bd49c06c6e8cc0308f7056 *html/diffLogoTable.html
b23854240eab683165a1f596fdd79882 *html/diffLogoTableConfiguration.html
5715c2c66f0c320ac1c90ed280bb17d8 *html/differenceOfICs.html
15df46ed0a4d4b45208d22b60a33a0b2 *html/drawDiffLogoTable.html
4e591d3bade4f81a8cc451567c973eda *html/enrichDiffLogoObjectWithPvalues.html
8c830db3f6fb05f0ecf20771655ab2a2 *html/enrichDiffLogoTableWithPvalues.html
27a9d1a443f5bdffa86acc23a5baaad5 *html/extendPwmsFromAlignmentVector.html
8f261fbe6f5b047dfb41fb4a9c8eec33 *html/getAlphabetFromCharacters.html
4daa0e650b1bdd3b5aa327816ec6bcdb *html/getAlphabetFromSequences.html
5b5e5f42f8f969820ac62c30daafa642 *html/getPwmFromAlignment.html
bee9c4850ed27376ef7c2d66163f2c3d *html/getPwmFromAlignmentFile.html
efa10b4d5415e84065906ee21367dfe5 *html/getPwmFromFastaFile.html
9a41a6ef9e7ffb16d070967cb36bc881 *html/getPwmFromFile.html
c7869b19628dd9350021073ed95e7642 *html/getPwmFromHomerFile.html
c69f9742b8a6e04b8fce22ebd06f4dc7 *html/getPwmFromPfmOrJasparFile.html
f9ed1545bad72942fe4b29f54efe1693 *html/getPwmFromPwmFile.html
6a267f0f1837e0711883dae2f653a064 *html/getSequencesFromAlignmentFile.html
11ad748afe9d3a7e10d43cdf06bb4cd5 *html/getSequencesFromFastaFile.html
ddb24892e04035abae8858d0f56d6250 *html/informationContent.html
d42df45f3a71d405e1111407e9aa1dae *html/localPwmAlignment.html
99924fafdd73497349885799c9b6103b *html/lossOfAbsICDifferences.html
5092c3b50ca141659d8bb9eb5477b729 *html/multipleLocalPwmsAlignment.html
161b20d05eff37e7db445615867177a5 *html/normalizePWM.html
ec8119622ceacfeb338c1bb16abb6965 *html/normalizedDifferenceOfProbabilities.html
78e174549648a781f4fcca72e3ef89e8 *html/prepareDiffLogoTable.html
a2f948d0e9d4b9f6c5181d3c03fd95c3 *html/probabilities.html
d5414c33cc8f9060bbb77e3a01483376 *html/pwmDivergence.html
99de204dd8a4b81170a79d0288573736 *html/pwmsDistanceMatrix.html
47e2be5d77457d3c2fa585171600f099 *html/reverseAlignmentVector.html
08d561a015bdcbb1a0bedfb3215bd581 *html/seqLogo.html
8c0b54c32764f2bfcaaf505051d52b9a *html/shannonDivergence.html
16ac523150d1073a46bf8a93947e0ef7 *html/sumOfAbsICDifferences.html
80054929b56131fe69399ac3bdd37e9c *html/sumOfAbsProbabilityDifferences.html
19949d6717e9b80dcff3a7516dd51723 *html/sumProbabilities.html
66337589f73729b58b5b9fb10e71e8ec *html/switchDirection.html
d4685ef930b958a8970336f8ac3cdca2 *html/twoSetsAveragePwmDivergenceFromAlignmentVector.html
