deepblue_get_regions {DeepBlueR} | R Documentation

## get_regions

### Description

Trigger the processing of the query's genomic regions. The output is a column based format with columns as defined in the 'output_format' parameter. Use the command 'info' for verifying the processing status. The 'get_request_data' command is used to download the regions using the programmatic interface. Alternatively, results can be download using the URL: http://deepblue.mpi-inf.mpg.de/download?r_id=<request_id>&key=<user_key>.

### Usage

    deepblue_get_regions(query_id = NULL, output_format = NULL,
      user_key = deepblue_options("user_key"))

### Arguments

`query_id` | - A string (Query ID)
`output_format` | - A string (Output format)
`user_key` | - A string (users token key)

### Value

request_id - A string (Request ID - Use it to retrieve the result with info() and get_request_data())

### See Also

Other Operating on the data regions: `deepblue_aggregate`, `deepblue_binning`, `deepblue_count_regions`, `deepblue_coverage`, `deepblue_distinct_column_values`, `deepblue_extend`, `deepblue_filter_regions`, `deepblue_flank`, `deepblue_get_experiments_by_query`, `deepblue_input_regions`, `deepblue_intersection`, `deepblue_merge_queries`, `deepblue_overlap`, `deepblue_query_cache`, `deepblue_query_experiment_type`, `deepblue_score_matrix`, `deepblue_select_annotations`, `deepblue_select_experiments`, `deepblue_select_regions`, `deepblue_tiling_regions`

### Examples

    data_id = deepblue_select_experiments(
        experiment_name="E002-H3K9ac.narrowPeak.bed")
    deepblue_get_regions(query_id =data_id,
        output_format = "CHROMOSOME,START,END")

[Package DeepBlueR version 1.14.0 Index]