deepblue_select_column {DeepBlueR} | R Documentation

## select column

### Description

A utility command that creates a list of experiments in which a specific column is selected. Such a list is needed as input for deepblue_score_matrix.

### Usage

    deepblue_select_column(experiments, column,
      user_key = deepblue_options("user_key"))

### Arguments

`experiments` | - A data frame with experiments obtained from deepblue_list_experiments
`column` | - The name of the column that is extracted from each experiment file
`user_key` | - A string (users token key)

### Value

A list of experiments with the selected column

### See Also

`deepblue_score_matrix`

`deepblue_list_experiments`

Other Utilities for information processing: `deepblue_diff`

### Examples

    blueprint_DNA_meth <- deepblue_list_experiments(
    genome = "GRCh38",
    epigenetic_mark = "DNA Methylation",
    technique = "Bisulfite-Seq",
    project = "BLUEPRINT EPIGENOME")

    blueprint_DNA_meth <- blueprint_DNA_meth[grep("bs_call",
     deepblue_extract_names(blueprint_DNA_meth)),]

    exp_columns <- deepblue_select_column(blueprint_DNA_meth, "VALUE")

[Package DeepBlueR version 1.14.0 Index]