Mm.phenomat {DTA} | R Documentation

## Design of the Mus Musculus DTA experiment from Doelken et al.

### Description

The phenotype matrix `Mm.phenomat` contains information about the experimental design. It is comprised of the filename, the type of RNA fraction measured (T, U or L), the labeling time and the replicate number.

### Usage

    Mm.phenomat

### Format

The phenomat is a matrix comprised of the file name, the type of RNA fraction mesasured (T, U or L, `fraction` column), the labeling time (`time`,`timeframe` column) and the replicate number (`nr` column). Rows in this matrix represent the individual experiments.

### Source

Doelken, L., Ruzsics, Z., Raedle, B., Friedel, C. C., Zimmer, R., Mages, J., Hoffmann, R., Dickinson, P., Forster, T., Ghazal, P., & Koszinowski, U. H. (2008). High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay. RNA 14(9), 1959-1972.

[Package DTA version 2.34.0 Index]