Package: DMCHMM
Type: Package
Title: Differentially Methylated CpG using Hidden Markov Model
Version: 1.10.0
Author: Farhad Shokoohi
Maintainer: Farhad Shokoohi <shokoohi@icloud.com>
Description: A pipeline for identifying differentially methylated CpG sites 
    using Hidden Markov Model in bisulfite sequencing data.
Depends: R (>= 4.0.0), SummarizedExperiment, methods, S4Vectors,
        BiocParallel, GenomicRanges, IRanges, fdrtool
Imports: utils, stats, grDevices, rtracklayer, multcomp, calibrate,
        graphics
Suggests: testthat, knitr
VignetteBuilder: knitr
biocViews: DifferentialMethylation, Sequencing, HiddenMarkovModel,
        Coverage
License: GPL-3
Date: 2020-03-07
Encoding: UTF-8
LazyData: true
BugReports: https://github.com/shokoohi/DMCHMM/issues
RoxygenNote: 7.1.0
NeedsCompilation: no
Packaged: 2020-04-28 05:37:41 UTC; biocbuild
git_url: https://git.bioconductor.org/packages/DMCHMM
git_branch: RELEASE_3_11
git_last_commit: 2be89e1
git_last_commit_date: 2020-04-27
Date/Publication: 2020-04-27
Built: R 4.0.0; ; 2020-04-28 17:48:23 UTC; windows
